Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq122 201 1e-46 seq19 131 2e-25 >seq122 Length=136518 Score = 201 bits (222), Expect = 1e-46 Identities = 572/871 (66%), Gaps = 16/871 (2%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | |||||||| | | ||||||||| | | || || |||||||| Sbjct 48005 CCAGGGCACTCGTTAGGACACATGAGGGTCCACTCTCCATTCTTCTCAACACGTTTCATG 48064 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 ||||||||||||||||| ||||| | || ||||| | || | | |||||| || || Sbjct 48065 AAGAGATCAGGAATCCAGAGAGCCAGGAAGAGATCGCGGGCACGAACTTCCTCCTTGCCA 48124 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 |||||| |||||| |||||| | | || ||| || ||||| || || | ||| ||| Sbjct 48125 TGGTTCTTTCGAAGATCAAGGAACTCGAAAACATCCGAGTGCCAAGGCTCGAGGTAGATG 48184 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | ||||| | ||||| || |||||||||| |||||| || |||||||| | Sbjct 48185 GCGAAAGCACCAGGTCTCTTGTTGCCACCCTGATCTACGTATCTTGCAGTGTTATTGAAG 48244 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| || | ||| || || || | || || || || | || || ||| Sbjct 48245 ACACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTTAGTGCCAGCAATGTATGAGCCA 48304 Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 | ||||| || || ||||| || || || ||||| || ||||| | || Sbjct 48305 GTAGCACGGATGCGGTGGATGTTGAGACCAATACCACCGGCCATCTTGGAGATCATGGCA 48364 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 || || | || || ||||| ||||| || ||||| ||| |||||| | || || Sbjct 48365 CAAGTCTTGAGGGTGTCGTAGATACCCTCAATGCTATCGTCCTTCATGTCGACGAGGAAG 48424 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 || || | ||| | || || ||||| || | || || ||||| || || Sbjct 48425 CAAGACGAGAGCTGGGCCTGGGGTGTCCCAGCATTGAAGAGAGTTGGGGAAGCATGAGTG 48484 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC----CCATTG 54516 || |||| ||| | || ||||| |||| || | || | ||| || | Sbjct 48485 AAGTATTTGCTAGACATGAGGTTGTAGGTCTGAATGACCTTCTCAACATCGTCGCCCCAG 48544 Query 54517 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 54576 ||| || || || |||||||| | ||| ||||| ||||| || |||||||||| || Sbjct 48545 ATG----CCGACAGCCACACGCATGATCATATGCTGTGGTCTCTCCACGATCTTGTCGTC 48600 Query 54577 TATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAG 54634 | || || | ||| ||| |||||||| || || || || || | ||| ||||| Sbjct 48601 AAGCTTAAGTAGGTAAGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAA-- 48658 Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATG 54694 |||| || || | || | |||| | | ||||||| | | | || ||| | | Sbjct 48659 TCTCTGTCATAGACGATGGCAGAGTCAAAGTCTTCCTTATGTCTCATGAC-ACACTCGTA 48717 Query 54695 GTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAA 54753 | ||| ||||| || ||||| | ||| || || || |||||||||| | | Sbjct 48718 TGTCTCCTTAGAAATCATAGGAGATGGCTTCTTGTTCTTTGGGTTGACATAGTGGTAGAG 48777 Query 54754 ATCCTTCATCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTA 54812 || | | || || | || | || || || | |||||||| ||||| ||||| | Sbjct 48778 GTCGCTGACGAC-AGACGACCATTGCTTCTTCGTCTGCTTGTGTAGGTTTGACACGGCAA 48836 Query 54813 TTCTAGCGGCTAGAATGGCATAATCCGGATG 54843 | | ||||| || |||||||| || || || Sbjct 48837 TACGTGCGGCAAGGATGGCATAGTCTGGGTG 48867 >seq19 Length=350955 Score = 131 bits (144), Expect = 2e-25 Identities = 374/569 (66%), Gaps = 12/569 (2%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| || || ||||| ||| ||| |||||||| || | || | ||||||||| Sbjct 189866 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAG 189807 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || || |||||||| || |||||||| || ||||| || ||||| || || | |||| Sbjct 189806 AAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCA 189747 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 ||||| || || || || || || ||||||||||| | || | || | || Sbjct 189746 CTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAAGACGTTGGGC-GAAGGTGGACT- 189689 Query 24306 TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 || ||| ||||| | | ||||| ||||||||||| | ||||| || |||| Sbjct 189688 TCTTGTCGGCAATCCAGTGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCT 189629 Query 24361 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 24420 | || ||||| ||||||| | || | | || || | || || ||||| | | Sbjct 189628 CAATGGCATTGAAGAGATGTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGA 189569 Query 24421 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 24480 | || | || || || ||||| || || || || || |||||||| |||| | Sbjct 189568 GGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGG 189509 Query 24481 CCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540 |||| | ||||| || || | | ||||| || | | || || || || || |||| Sbjct 189508 CCTCTGGGATCTGGACCTCGCCAGAGAATCGCTCGACAAGGTTCTCGTTGACAATGCCGT 189449 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA-- 24597 || || || || || || | | || || || |||| ||||| | || ||| Sbjct 189448 CAGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGAATTTCTCGTCATCGT-TTAGG 189390 Query 24598 -GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 24656 | || |||| || | || ||| || |||| ||| | || || | ||||| || || Sbjct 189389 CGGTTGCTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCGGTCCAGAAGGAA 189330 Query 24657 GCCTCTGCCTTTTTATACATATTCCAGAT 24685 || || ||| || ||||| | |||||| Sbjct 189329 GCTTCGTGCTTCTTGTACATCTGCCAGAT 189301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717852132400