Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq87 125 8e-24 seq244 113 5e-20 >seq87 Length=177310 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || | ||||| || |||| || || ||||| || Sbjct 65621 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTGCTTGCCG 65562 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| || |||||||||||||||| || | | |||||||||| ||| || ||| Sbjct 65561 GCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 65502 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | |||||||| || ||||| || | ||||| || |||||||| || ||| Sbjct 65501 ACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 65442 Query 43167 TTTACAAAGATTTGCAT 43183 || || ||||| ||||| Sbjct 65441 TTGACGAAGATCTGCAT 65425 >seq244 Length=60485 Score = 113 bits (124), Expect = 5e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| ||||| ||||| || | ||||| || |||| || || ||||| ||| Sbjct 25865 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGTTGCTTTCCA 25806 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| || | |||||| ||||||| || | | |||||||||| ||| || ||| Sbjct 25805 GCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 25746 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | ||| | | | || || ||||| || || | |||||||| ||||| || || || Sbjct 25745 A-CGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGT 25687 Query 43166 CTTTACAAAGATTTGCATTTT 43186 ||| || ||||| ||||| || Sbjct 25686 CTTGACGAAGATCTGCATCTT 25666 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || ||| || || | || || | ||||||||| || || Sbjct 26379 CTCCTTCTGAATGTTGTAGTCGCTCAGCGTTCGGCCATCCTCCAACTGCTTACCCGCAAA 26320 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || ||||| || ||||||| ||| | | |||||||||| ||| || ||||| ||| Sbjct 26319 GATAAGTCGTTGTTGGTCGGGCGGGATTCCCTCCTTGTCCTGGATCTTGGATTTGA-CGT 26261 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || | ||||| || ||||| || || ||||| | Sbjct 26260 TGTCGATTGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTTGCCGGTGAGGGTCTTCA 26201 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 26200 CGAAGATTTGCAT 26188 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 ||| |||||||| | | ||| | ||||| || | ||| ||||| || |||||||| Sbjct 26649 CTACTGTCCTCCACGGAGACGGAGAACCAAGTGGAGCGTGGATTCCTTCTGGATATTGTA 26590 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 ||| || || || | || || ||||||||||||||||| ||||| || ||||| || Sbjct 26589 ATCGCTCAAGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATC 26530 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCG 43128 | || | || ||||||||| ||| | || | | ||| | | | |||||| | Sbjct 26529 CGGAGGAATGCCTTCCTTGTCC-TGAATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAG 26471 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || | || || || || ||||| | ||||| ||||| || ||||| Sbjct 26470 ATTCAACTTCTAGGGTAATAGTCTTTCCCGTCAATGTCTTGACAAAAATCTGCAT 26416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813990401400