Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq244 118 7e-22
seq87 116 2e-21
seq5 98.7 6e-16
>seq244
Length=60485
Score = 118 bits (130), Expect = 7e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || || ||||| | || || || ||||| ||||||||||||||
Sbjct 25895 CCACCACGCAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 25836
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| || | ||||| || |||||||| | ||||| |||||| ||
Sbjct 25835 AGAGTGCGACCGTCCTCGAGTTGCTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGA 25776
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | | || | ||| | ||||||||
Sbjct 25775 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAGGATTCGACC 25716
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | |||||||| ||||| |||||||| || || ||||||||||||
Sbjct 25715 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATC 25668
Score = 109 bits (120), Expect = 4e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| || | || || ||||| | ||| ||| ||||| |||||||||||||||
Sbjct 26186 CCACCGCGGAGACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAGTCGGAC 26127
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | ||||||||| |||||||| | ||||||||||| ||
Sbjct 26126 AGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 26067
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | || | | || | |||| ||| |||||
Sbjct 26066 ATACCCTCCTTGTCTTGGATCTTCGACTTAACATTGTCGATGGTGTCGGACGACTCGACC 26007
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
|| | |||||||| || ||||| || || || ||
Sbjct 26006 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGAC 25972
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || || || || || ||||| | ||| || ||||| |||||||||||| |
Sbjct 26414 CCACCACGAAGTCTGAGAACAAGGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTC 26355
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| ||| | || ||||||||||| || || || || || || || |||||| ||
Sbjct 26354 AGCGTTCGGCCATCCTCCAACTGCTTACCCGCAAAGATAAGTCGTTGTTGGTCGGGCGGG 26295
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| || | | | | || | || | || || ||
Sbjct 26294 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATTGTGTCCGAAGACTCCACC 26235
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || ||||||||||| || ||||| ||||| |||||
Sbjct 26234 TCAAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 26188
>seq87
Length=177310
Score = 116 bits (128), Expect = 2e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 34193 GTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCT 34252
|| || || ||||| |||||||||||||| || |||| |||| || | ||||||||
Sbjct 65621 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTGCTTGCCG 65562
Query 34253 GCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT 34312
||||| || || |||||||||||| ||| | | ||||||||| ||||| |||
Sbjct 65561 GCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 65502
Query 34313 AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTT 34372
| || | | || | ||| | || || || || | ||||| || ||||| ||||| ||
Sbjct 65501 ACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 65442
Query 34373 TTCACAAAGATCTGCAT 34389
|| || |||||||||||
Sbjct 65441 TTGACGAAGATCTGCAT 65425
>seq5
Length=467666
Score = 98.7 bits (108), Expect = 6e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | || || ||||| | || |||||||| ||||||||||||||
Sbjct 48692 CCGCCACGGAGACGGAGGACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAA 48633
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | |||||||| ||||| || || ||||| |||||| |||
Sbjct 48632 AGAGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGA 48573
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | | || | |||| || || ||
Sbjct 48572 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 48513
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381
|| | ||||| || || || || || || ||||| |||
Sbjct 48512 TCGAGGGTGATAGTCTTACCCGTAAGGGTCTTCACGAAG 48474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323070011592800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |