Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq244 141 7e-29 seq87 138 9e-28 seq5 105 5e-18 >seq244 Length=60485 Score = 141 bits (156), Expect = 7e-29 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||||||||||||||||||||||||||| || |||| |||| || ||||| Sbjct 25872 GTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGTTG 25813 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| ||||| ||||| ||||||||||||||||| | ||||||||||||| || || Sbjct 25812 CTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTT 25753 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | ||| || ||||| | || || |||||||| || Sbjct 25752 CGACTTGACGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGT 25693 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| || ||||| ||||| ||| Sbjct 25692 GAGAGTCTTGACGAAGATCTGCATCTTG 25665 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||||||||||||| ||| || | || || || || || |||||||| Sbjct 26150 TCCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAA 26091 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| ||||| ||||| ||||| | |||||||||||| || || |||||| Sbjct 26090 ATCAATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGGATCTTCGACTTAACATTG 26031 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| ||| ||||| | ||| || ||||| || || || ||||| || Sbjct 26030 TCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGAC 25972 >seq87 Length=177310 Score = 138 bits (152), Expect = 9e-28 Identities = 158/211 (75%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || |||||||||||||| |||||||||||| || || |||| || ||||| Sbjct 65627 TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTGC 65568 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| |||| ||||| |||||||| || | ||||||||||||| || || Sbjct 65567 TTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTG 65508 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| | | ||||||||| | ||| || ||||||||||| Sbjct 65507 GACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 65448 Query 45314 AGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 || ||||| || ||||| |||||| |||||| Sbjct 65447 AGGGTCTTGACGAAGATCTGCATGATTGCCT 65417 >seq5 Length=467666 Score = 105 bits (116), Expect = 5e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||| ||||| |||||||||||| || || |||| || ||||| Sbjct 48669 GTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCAAGTTG 48610 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| |||||||||||||| || | |||||||||||| || || Sbjct 48609 CTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 48550 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||||||||| | ||| || ||||| ||||| Sbjct 48549 GGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGT 48490 Query 45313 CAGAGTCTTCACAAAG 45328 || |||||||| ||| Sbjct 48489 AAGGGTCTTCACGAAG 48474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395072768435605