Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq122 295 6e-75 seq19 165 7e-36 seq244 111 1e-19 seq87 86.0 6e-12 >seq122 Length=136518 Score = 295 bits (326), Expect = 6e-75 Identities = 1007/1552 (65%), Gaps = 60/1552 (4%) Strand=Plus/Plus Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACG 22511 |||| || || || |||||||| | | ||| ||||| ||| |||||||| ||| | | Sbjct 47160 GGTTAACGACCTGGAACTCGCCAGCGAGGACACGGCGAGAGTAGATGTTGGAAGTGTAAG 47219 Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGC-- 22569 | ||||| | |||||||| |||| ||||| | || || || ||||| || || Sbjct 47220 GCTCGAAGCACTCATTGTTACCCAAGATCTGGGATGTGCTGGCCGTGGGCATGGGGGCGA 47279 Query 22570 -CAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGCATCGACC 22625 ||||| ||| ||| | || || | | |||| ||| ||| ||||| | | || Sbjct 47280 CCAACA--AGCT-GTTGCGCACACCATTTTGCTTGA---TTTGCTCCTTGAGGCTGGTCC 47333 Query 22626 AGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCG 22683 ||||||| ||||| || || || ||||| |||||| |||||||| | | ||| ||| Sbjct 47334 AGTCCCAAAGATCCGATGGGGTGACATT---CCACATGTCGTATTGAAGGATGCCCTGCG 47390 Query 22684 ACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT 22743 | || || || ||||| || ||| || || | | | ||||| || | Sbjct 47391 AGACG--GGAGAACCCTCGTAGGTAGAGTAAGGGCCTTCGACCTTGGCAATCTCCGTGGA 47448 Query 22744 CGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC--- 22800 ||| ||| ||| | | || || ||||||||||| | |||||| |||| || Sbjct 47449 CGCAGTCAAGGCGGCATGGTAGATCGTCTCGAAGATCTGCTTGTTTAATTGTCTAGCCTC 47508 Query 22801 -GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGC 22859 || ||| || | |||||||||| || ||| | || || | ||||||||| | Sbjct 47509 TGGTGAC----TCAAAAGGCATACGCAATGCCAAGAATGTATCAGCAAGACCCTGAACAC 47564 Query 22860 CTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTT----GCCTCGGGCAAAGGATAC 22915 | | ||| || || |||| | || || || || ||||| || | || || Sbjct 47565 CAAGACCAATGGGACGGTGTCGCATGTTG----CTGTTACGGGCCTCTGGGACGGGGTAA 47620 Query 22916 CAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTC-ACAATTTTCGTTATNNNNNNNNN 22974 |||| ||| || |||||||||| || || | || | || || | Sbjct 47621 TAATTGACATCAATAATTCTGTTCAAATTG-TGAACGACGACTTGGGTAACCTCATGCAA 47679 Query 22975 NNNNTCAAAGTCGTAAACGCC--CGATTGTA--CAACAAACTTGTTGACGGCGAT-CGAG 23029 | ||||| ||| ||| || || || ||||||| |||||| | |||| Sbjct 47680 CTTCTGGAAGTCATAAGTGCCTTCG-TTATAGTCAACAAAG-----GACGGCAACGCGAG 47733 Query 23030 GCAAGAT----TGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACA 23085 | ||| | |||| || |||||||| || || | |||||| | || ||||| || Sbjct 47734 GGAAGCTAAGTTGCAGACAGCCACCTCATCAGGGGCGGAGTACTCAATGATCTCGGTGCA 47793 Query 23086 TAGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGA 23142 ||||| ||| | || || || | ||| ||||||| || || || ||||| Sbjct 47794 AAGATTCGAGCTGCGA---ATAGTACCAAGATTCTTCTGGTTACTCTTGCGGTTGCAGTG 47850 Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202 ||||||||| |||||| | || | || ||||| ||| | ||||| || || ||| Sbjct 47851 ATCCTTGTAAAGCATGAAGGGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGCGTACCA 47910 Query 23203 CATAGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACA 23261 || ||||||| | || | || || | | || ||| | |||||||| | ||||| Sbjct 47911 CAGCTTCTGAGCCTTAAT-CTTCTGGCGGCCGCGACCCTCTGCTTCGTACTTCTCGTACA 47969 Query 23262 ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGA 23321 || || || || | || ||| ||| || || || || | | | |||||||||| Sbjct 47970 GGGCCTCGAACTCATCGCCATAAACGTCAGCTAGACCAGGGCACTCGTTAGGACACATGA 48029 Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 | ||||| | | || ||||| ||| |||| || ||||| || ||||| ||||| Sbjct 48030 GGGTCCACTCTCCATTCTTCTCAACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCCA 48089 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 ||| || |||||||| || || ||||| ||||| ||||||| | ||| | || | Sbjct 48090 GGAAGAGATCGCGGGCACGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACT 48149 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || || |||| ||||| ||||||||||| | ||| || || || |||||||| |||| Sbjct 48150 CGAAAACATCCGAGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGTCTCTTGTTGC 48209 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 | |||||||| ||||| | || ||||| ||| | || | |||||| || || | |||| Sbjct 48210 CACCCTGATCTACGTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGT 48269 Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621 | || | |||| ||| || | || || | || || | | ||| | || || Sbjct 48270 TCGAGGTGCCGTTAGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGA 48329 Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681 ||| || || ||| || || || ||||| || || || || ||||||||||| | Sbjct 48330 GACCAATACCACCGGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATAC 48389 Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741 |||| ||||| || || || | |||| | ||| || || || | || || | ||| | Sbjct 48390 CCTCAATGCTATCGTCCTTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTG 48449 Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801 | | || ||| || || ||| || || || |||||| | ||||| || |||| Sbjct 48450 TCCCAGCATTGAAGAGAGTTGGGGAAGCATGAGTGAAGTATTTGCTAGACATGAGGTTGT 48509 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 | || | ||| | |||| || || || || |||| || || ||||| |||| Sbjct 48510 AGGTCTGAATGACCTTCTCAACATCGTCGCCCCAGATGCCGACAGCCACACGCATGATCA 48569 Query 23862 TGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCG 23921 | | || |||||||| || | | ||| || || | || || || || | || | Sbjct 48570 TATGCTGTGGTCTCTCCACGATCTTGTCGTCAAGCTTAAGTAGGTAAGATCGCTCCAAAG 48629 Query 23922 TTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 | || || || || || | ||||| || || | || | || ||||| || Sbjct 48630 TCTTGAAGCCGAAGTATTGGTAGTTGAAATCTCTGTCATAGACGATGGCAGA 48681 >seq19 Length=350955 Score = 165 bits (182), Expect = 7e-36 Identities = 483/735 (66%), Gaps = 27/735 (4%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||| ||||| || || ||||||| ||| || | || || Sbjct 189301 ATCTGGCAGATGTACAAGAAGCACGAAGCTTCCTTCTGGACCGCCGAGGAGATTGATCTA 189360 Query 57630 TCTAAGGATCTGAGCGATTGGG---ATTCCCTCAAAGAATCTGA-GAGAAATTTT--ATT 57683 || |||||||| ||| ||| | ||| || || ||| |||||||| | || Sbjct 189361 TCCAAGGATCTCCACGACTGGAGCAACCGCCTAAACGA---TGACGAGAAATTCTTCATC 189417 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 ||| | | || || ||||||||||| || || ||||| |||||||| | ||||| Sbjct 189418 TCCCACATCCTCGCCTTCTTCGCCGCATCTGACGGCATTGTCAACGAGAACCTTGTCGAG 189477 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 |||| || || || || | | ||||| ||||||| ||||| || || | Sbjct 189478 CGATTCTCTGGCGAGGTCCAGATCCCAGAGGCCCGATGCTTCTACGGCTTCCAGATCATG 189537 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | || || || | || || || ||||| || || ||| | ||||| Sbjct 189538 ATGGAGAACATCCACTCCGAGACTTACTCCCTCCTCATTGACACCTACATCAAGGAGCCT 189597 Query 57864 GACGAGAA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 | | |||| || | || ||||| || || || || || || ||| ||||||||| Sbjct 189598 GCCCAGAAGACACA-TCTCTTCAATGCCATTGAGACCATTCCTTGCATCCGCAAGAAGGC 189656 Query 57923 AGAGTGGTCAATCAAATGGAT----AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAA 57978 || ||| | | | ||||| | ||| | | |||| |||||| | | || | Sbjct 189657 CGACTGGGCCCTGCACTGGATTGCCGACAAG----AAGTCCACCTTCGCCCAACGTCTTA 189712 Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 | || |||||||| || || ||||| ||||| || ||| || | || || ||| Sbjct 189713 TTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGAGCCTTCGCTTCCATCTTCTGGC 189772 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 | ||||| || || || |||||||| ||||| || |||||| | || ||||| || | Sbjct 189773 TCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAACTCATCTCGCGTGATG 189832 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 ||||||| || || || || || ||||| ||| ||| ||| |||| ||||| | | Sbjct 189833 AGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTCCCAC---CTCAA-CAACCGCCCC 189888 Query 58159 G----GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 | ||| || | | || |||||||| || ||| | || || | ||||| | Sbjct 189889 GGCAAGGACGTGGTCGAGAAGATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTG 189948 Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274 || || || || || ||| | || || |||||| | | ||| ||||||| Sbjct 189949 ACGGAGGCTCTGCCCTGTGCCCTACTAGGCATGAACGCCAACCTCATGAAGCAGTACATC 190008 Query 58275 GAGTTTGTTGCCGAC 58289 ||||| || |||||| Sbjct 190009 GAGTTCGTCGCCGAC 190023 >seq244 Length=60485 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| |||||||| | || || || | || Sbjct 26188 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACGATCACTCTTGAGGTGGAGTCTTCG 26247 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || ||||||||| || | ||||||||||| Sbjct 26248 GACACAATCGACAACGTCAAATCCAAGATCCAGGACAAGGAGGGAATCCCGCCCGACCAA 26307 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || || || |||||||| || || ||||||| || ||| Sbjct 26308 CAACGACTTATCTTTGCGGGTAAGCAGTTGGAGGATGGCCGAACGCTGAGCGACTACAAC 26367 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||||| || || || || ||||| | || |||| Sbjct 26368 ATTCAGAAGGAGTCAACTCTGCACCTTGTTCTCAGACTTCGTGGTGGTA 26416 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| |||| || || || || ||| | || |||||| | ||| Sbjct 26416 ATGCAGATTTTTGTCAAGACATTGACGGGAAAGACTATTACCCTAGAAGTTGAATCTTCC 26475 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||||||| | || || || ||| Sbjct 26476 GACACCATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAG 26535 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || |||||||| || ||| ||||||| | || |||||||||| || Sbjct 26536 CAACGTCTCATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCTTGAGCGATTACAAT 26595 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || || || |||| || Sbjct 26596 ATCCAGAAGGAATCCACGCTCCACTTGGTTCT 26627 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || || || || |||||| | || || || ||||||||| ||| Sbjct 25970 TCGTCAAGACCCTTACCGGAAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCG 26029 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | || || || || |||||||| || | || || ||||||||||| | | Sbjct 26030 ACAATGTTAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCTGACCAGCAGCGATTGA 26089 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | ||||| ||||| ||| | || || || || ||| || |||||||| || | Sbjct 26090 TTTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTGTCCGACTACAACATTCAGAAGG 26149 Query 31383 AATCGACTCTTCATCTGGTACT 31404 ||||||||||||| || || || Sbjct 26150 AATCGACTCTTCACCTCGTCCT 26171 >seq87 Length=177310 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || ||||| || |||||| | || || || Sbjct 65420 CAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGT 65479 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| |||| | ||||| | || ||||||||| || | || |||| Sbjct 65480 CTAGCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCCG 65539 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| ||||| || | |||||| ||| | ||| | Sbjct 65540 ACCAGCAGCGACTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACTCTCTCCGACT 65599 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || || |||||||| || || Sbjct 65600 ACAACATCCAGAAGGAGAGCACCCTTCATCTCGTCCT 65636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763586099600