Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq122 205 1e-47
seq19 131 2e-25
>seq122
Length=136518
Score = 205 bits (226), Expect = 1e-47
Identities = 600/920 (65%), Gaps = 12/920 (1%)
Strand=Plus/Plus
Query 62958 TTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 63017
|| || || || ||||||| || | | || | || ||||| |||||||||||
Sbjct 47744 TTGCAGACAGCCACCTCATCAGGGGCGGAGTACTCAATGATCTCGGTGCAAAGATTCGAG 47803
Query 63018 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63077
| ||||| || | ||| | || |||||||| ||| || |||||| |||||
Sbjct 47804 CTGCGAATAGTACCAAGATTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTAAAGC 47863
Query 63078 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGC 63136
||||| ||| | ||||| ||| |||||| || | ||| || | ||| | | || ||||
Sbjct 47864 ATGAAGGGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGCGTACCACA-GCTTCTGAGC 47922
Query 63137 CTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTC 63196
||| || | | | | ||| |||||| |||| ||||||||
Sbjct 47923 CTTAATCTTCTGGCGGCCGCGACCCTCTGCTTCGTACTTCTCGTACAGGGCCTCGAACTC 47982
Query 63197 GTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCC 63256
|| || |||| | | | | ||| || || | |||||||| | | |||||||||
Sbjct 47983 ATCGCCATAAACGTCAGCTAGACCAGGGCACTCGTTAGGACACATGAGGGTCCACTCTCC 48042
Query 63257 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 63316
| | || || |||||||| ||||||||||||||||| ||||| | || ||||| |
Sbjct 48043 ATTCTTCTCAACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCCAGGAAGAGATCGCG 48102
Query 63317 TGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 63376
| | | |||||| || || |||||| |||||| |||||| | | || ||| ||
Sbjct 48103 GGCACGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCGAAAACATCCGA 48162
Query 63377 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 63436
||||| || || | ||| ||||| | | | ||||| | ||||| || ||||||||||
Sbjct 48163 GTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACCCTGATCTAC 48222
Query 63437 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATT 63496
|||||| || |||||||| | || | | ||| || | ||| ||||| || | || ||
Sbjct 48223 GTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTT 48282
Query 63497 GGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCC 63556
|| || | || || ||| | ||||| || || ||||| || || ||
Sbjct 48283 AGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGAGACCAATACCACC 48342
Query 63557 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATC 63616
||||| || ||||| | || || || | ||||| ||||| || || ||||||||
Sbjct 48343 GGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCCTCAATGCTATC 48402
Query 63617 ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAA 63676
|| |||||| | || || || || | ||| | | || || ||||| ||
Sbjct 48403 GTCCTTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTCCCAGCATTGAA 48462
Query 63677 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63736
| || || ||||| || || || |||| ||| | || ||||| |||| ||| |
Sbjct 48463 GAGAGTTGGGGAAGCATGAGTGAAGTATTTGCTAGACATGAGGTTGTAGGTCTGAATGAC 48522
Query 63737 TGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAG 63792
|| | ||| || |||| || || || |||||||| | ||| ||||| |
Sbjct 48523 CTTCTCAACATCGTCGCCCCAGATG----CCGACAGCCACACGCATGATCATATGCTGTG 48578
Query 63793 GTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 63852
|||| || || || |||| || | || | | ||| ||| |||||||| || || |
Sbjct 48579 GTCTCTCCACGATCTTGTCGTCAAGCTTAAGTAGGTAAGATCGCTCCAAAGTCTTGAAGC 48638
Query 63853 CAAAATAGTTGTA--TGAAA 63870
| || || | ||| |||||
Sbjct 48639 CGAAGTATTGGTAGTTGAAA 48658
>seq19
Length=350955
Score = 131 bits (144), Expect = 2e-25
Identities = 374/569 (66%), Gaps = 12/569 (2%)
Strand=Plus/Minus
Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632
|||| || || ||||| ||| |||||||||||| || | || | |||||| ||
Sbjct 189866 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAG 189807
Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692
|| || || |||||||| || |||||||| || ||||| || ||||||||||| | |||
Sbjct 189806 AAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCA 189747
Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752
|||||||| || || || || || ||||||||||| | | | || | ||
Sbjct 189746 CTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAAGACGTTGGGC-GAAGGTGGACT- 189689
Query 33753 TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807
|| ||| ||||| | | ||||| ||||||||||| | ||||| || || |
Sbjct 189688 TCTTGTCGGCAATCCAGTGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCT 189629
Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867
| |||||||| ||||||| | || | | || || | || || || || | |
Sbjct 189628 CAATGGCATTGAAGAGATGTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGA 189569
Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927
| || | || || || ||||| || || ||||| || |||||||| |||| |
Sbjct 189568 GGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGG 189509
Query 33928 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT 33987
|||| | ||||| || || | | ||||| || | | || || || || || || |
Sbjct 189508 CCTCTGGGATCTGGACCTCGCCAGAGAATCGCTCGACAAGGTTCTCGTTGACAATGCCGT 189449
Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA-- 34044
|| || || || || || | | || || || |||| ||||| | || |||
Sbjct 189448 CAGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGAATTTCTCGTCATCGT-TTAGG 189390
Query 34045 -GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 34103
| || |||| || | || ||| || |||| ||| | || || | ||||| || ||
Sbjct 189389 CGGTTGCTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCGGTCCAGAAGGAA 189330
Query 34104 GCCTCTGCCTTTTTATACATATTCCAGAT 34132
|| || ||| || ||||| | ||||||
Sbjct 189329 GCTTCGTGCTTCTTGTACATCTGCCAGAT 189301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629813624276400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |