Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq122 205 1e-47 seq19 131 2e-25 >seq122 Length=136518 Score = 205 bits (226), Expect = 1e-47 Identities = 600/920 (65%), Gaps = 12/920 (1%) Strand=Plus/Plus Query 62958 TTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 63017 || || || || ||||||| || | | || | || ||||| ||||||||||| Sbjct 47744 TTGCAGACAGCCACCTCATCAGGGGCGGAGTACTCAATGATCTCGGTGCAAAGATTCGAG 47803 Query 63018 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63077 | ||||| || | ||| | || |||||||| ||| || |||||| ||||| Sbjct 47804 CTGCGAATAGTACCAAGATTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTAAAGC 47863 Query 63078 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGC 63136 ||||| ||| | ||||| ||| |||||| || | ||| || | ||| | | || |||| Sbjct 47864 ATGAAGGGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGCGTACCACA-GCTTCTGAGC 47922 Query 63137 CTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTC 63196 ||| || | | | | ||| |||||| |||| |||||||| Sbjct 47923 CTTAATCTTCTGGCGGCCGCGACCCTCTGCTTCGTACTTCTCGTACAGGGCCTCGAACTC 47982 Query 63197 GTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCC 63256 || || |||| | | | | ||| || || | |||||||| | | ||||||||| Sbjct 47983 ATCGCCATAAACGTCAGCTAGACCAGGGCACTCGTTAGGACACATGAGGGTCCACTCTCC 48042 Query 63257 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 63316 | | || || |||||||| ||||||||||||||||| ||||| | || ||||| | Sbjct 48043 ATTCTTCTCAACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCCAGGAAGAGATCGCG 48102 Query 63317 TGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 63376 | | | |||||| || || |||||| |||||| |||||| | | || ||| || Sbjct 48103 GGCACGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCGAAAACATCCGA 48162 Query 63377 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 63436 ||||| || || | ||| ||||| | | | ||||| | ||||| || |||||||||| Sbjct 48163 GTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACCCTGATCTAC 48222 Query 63437 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATT 63496 |||||| || |||||||| | || | | ||| || | ||| ||||| || | || || Sbjct 48223 GTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTT 48282 Query 63497 GGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCC 63556 || || | || || ||| | ||||| || || ||||| || || || Sbjct 48283 AGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGAGACCAATACCACC 48342 Query 63557 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATC 63616 ||||| || ||||| | || || || | ||||| ||||| || || |||||||| Sbjct 48343 GGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCCTCAATGCTATC 48402 Query 63617 ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAA 63676 || |||||| | || || || || | ||| | | || || ||||| || Sbjct 48403 GTCCTTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTCCCAGCATTGAA 48462 Query 63677 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63736 | || || ||||| || || || |||| ||| | || ||||| |||| ||| | Sbjct 48463 GAGAGTTGGGGAAGCATGAGTGAAGTATTTGCTAGACATGAGGTTGTAGGTCTGAATGAC 48522 Query 63737 TGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAG 63792 || | ||| || |||| || || || |||||||| | ||| ||||| | Sbjct 48523 CTTCTCAACATCGTCGCCCCAGATG----CCGACAGCCACACGCATGATCATATGCTGTG 48578 Query 63793 GTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 63852 |||| || || || |||| || | || | | ||| ||| |||||||| || || | Sbjct 48579 GTCTCTCCACGATCTTGTCGTCAAGCTTAAGTAGGTAAGATCGCTCCAAAGTCTTGAAGC 48638 Query 63853 CAAAATAGTTGTA--TGAAA 63870 | || || | ||| ||||| Sbjct 48639 CGAAGTATTGGTAGTTGAAA 48658 >seq19 Length=350955 Score = 131 bits (144), Expect = 2e-25 Identities = 374/569 (66%), Gaps = 12/569 (2%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || ||||| ||| |||||||||||| || | || | |||||| || Sbjct 189866 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAG 189807 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || |||||||| || |||||||| || ||||| || ||||||||||| | ||| Sbjct 189806 AAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCA 189747 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752 |||||||| || || || || || ||||||||||| | | | || | || Sbjct 189746 CTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAAGACGTTGGGC-GAAGGTGGACT- 189689 Query 33753 TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 || ||| ||||| | | ||||| ||||||||||| | ||||| || || | Sbjct 189688 TCTTGTCGGCAATCCAGTGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCT 189629 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | |||||||| ||||||| | || | | || || | || || || || | | Sbjct 189628 CAATGGCATTGAAGAGATGTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGA 189569 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 | || | || || || ||||| || || ||||| || |||||||| |||| | Sbjct 189568 GGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGG 189509 Query 33928 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT 33987 |||| | ||||| || || | | ||||| || | | || || || || || || | Sbjct 189508 CCTCTGGGATCTGGACCTCGCCAGAGAATCGCTCGACAAGGTTCTCGTTGACAATGCCGT 189449 Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA-- 34044 || || || || || || | | || || || |||| ||||| | || ||| Sbjct 189448 CAGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGAATTTCTCGTCATCGT-TTAGG 189390 Query 34045 -GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 34103 | || |||| || | || ||| || |||| ||| | || || | ||||| || || Sbjct 189389 CGGTTGCTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCGGTCCAGAAGGAA 189330 Query 34104 GCCTCTGCCTTTTTATACATATTCCAGAT 34132 || || ||| || ||||| | |||||| Sbjct 189329 GCTTCGTGCTTCTTGTACATCTGCCAGAT 189301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813624276400