Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq122 246 4e-60 seq19 127 3e-24 >seq122 Length=136518 Score = 246 bits (272), Expect = 4e-60 Identities = 759/1157 (66%), Gaps = 28/1157 (2%) Strand=Plus/Plus Query 79611 CAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 79670 |||||||| || || | || || || || ||||||| || | | || | || || Sbjct 47725 CAACGCGAGGGAAGCTAAGTTGCAGACAGCCACCTCATCAGGGGCGGAGTACTCAATGAT 47784 Query 79671 TTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 79730 || ||||| || || | ||| || || | ||| | || |||||||| ||| Sbjct 47785 CTCGGTGCAAAGATTCGAGCTGCGAATAGTACCAAGATTCTTCTGGTTACTCTTGCGGTT 47844 Query 79731 ACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 79790 || |||||| ||||| ||||| ||| | ||||| ||| |||||| || | ||| || Sbjct 47845 GCAGTGATCCTTGTAAAGCATGAAGGGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGC 47904 Query 79791 TTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCT-CTTTTCTCT--TTCGTA-T 79845 | ||| | | || ||||||| || | || | | | |||| |||||| | Sbjct 47905 GTACCACA-GCTTCTGAGCCTTAATCTT---CTGGCGGCCGCGACCCTCTGCTTCGTACT 47960 Query 79846 TGT-GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTC 79904 | | ||| | | |||||||| || || |||| || ||| ||||| || |||| Sbjct 47961 TCTCGTACAGGGCC--TCGAACTCATCGCCATAAACGTCAGCTAGACCAGGGCACTCGTT 48018 Query 79905 AGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAAT 79964 ||||||||| | | ||||||||||| | || || |||||||| |||||||||||||| Sbjct 48019 AGGACACATGAGGGTCCACTCTCCATTCTTCTCAACACGTTTCATGAAGAGATCAGGAAT 48078 Query 79965 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAG 80024 ||| ||||| | || ||||| | || | | ||||| || || |||||| ||| Sbjct 48079 CCAGAGAGCCAGGAAGAGATCGCGGGCACGAACTTCCTCCTTGCCATGGTTCTTTCGAAG 48138 Query 80025 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 80084 ||| |||||| | | || ||| || ||||| || || | ||| ||||| | | | || || Sbjct 48139 ATCAAGGAACTCGAAAACATCCGAGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGG 48198 Query 80085 TCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 80144 || ||||| || |||||||||| |||||| || |||||||| | || | | ||| || Sbjct 48199 TCTCTTGTTGCCACCCTGATCTACGTATCTTGCAGTGTTATTGAAGACACGTAGCATGGG 48258 Query 80145 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 80204 | ||| || || || || || || || || | || || ||| | ||||| || Sbjct 48259 TACAATGCCGTTCGAGGTGCCGTTAGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCG 48318 Query 80205 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 80264 || ||||| || || || ||||| || ||||| | || || || | || Sbjct 48319 GTGGATGTTGAGACCAATACCACCGGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGT 48378 Query 80265 ATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTG 80324 || ||||| ||||| |||||||| || |||||| | || || || || | || Sbjct 48379 GTCGTAGATACCCTCAATGCTATCGTCCTTCATGTCGACGAGGAAGCAAGACGAGAGCTG 48438 Query 80325 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 80384 | | || || ||||| || | || || ||||| || || || |||| ||| Sbjct 48439 GGCCTGGGGTGTCCCAGCATTGAAGAGAGTTGGGGAAGCATGAGTGAAGTATTTGCTAGA 48498 Query 80385 CAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCATTGATGAATTCCTACCG 80440 || || ||||| |||| ||| | || | ||| || |||| || || | Sbjct 48499 CATGAGGTTGTAGGTCTGAATGACCTTCTCAACATCGTCGCCCCAGATG----CCGACAG 48554 Query 80441 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 80500 | |||||||| | ||| ||||| ||||| || |||||||||| | | || | | || Sbjct 48555 CCACACGCATGATCATATGCTGTGGTCTCTCCACGATCTTGTCGTCAAGCTTAAGTAGGT 48614 Query 80501 AAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAAT 80558 ||||| |||||||| || || || || || | ||| ||||| |||| || || | Sbjct 48615 AAGATCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAA--TCTCTGTCATAGAC 48672 Query 80559 AATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAA 80617 || | |||| | | ||||||| | | | || ||| | | | ||| |||| Sbjct 48673 GATGGCAGAGTCAAAGTCTTCCTTATGTCTCATGAC-ACACTCGTATGTCTCCTTAGAAA 48731 Query 80618 TAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTT 80677 | || ||||| | ||| || || || || ||||||| | | | || | || Sbjct 48732 TCATAGGAGATGGCTTCTTGTTCTTTGGGTTGACATAGTGGTAGAGGTCGCTGACGAC-A 48790 Query 80678 CACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAA 80736 || | || | || || || | ||||||||| ||||| ||||| || | ||||| | Sbjct 48791 GACGACCATTGCTTCTTCGTCTGCTTGTGTAGGTTTGACACGGCAATACGTGCGGCAAGG 48850 Query 80737 ATGGCATAATCTGGATG 80753 |||||||| ||||| || Sbjct 48851 ATGGCATAGTCTGGGTG 48867 >seq19 Length=350955 Score = 127 bits (140), Expect = 3e-24 Identities = 283/422 (67%), Gaps = 7/422 (2%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || || ||||| ||| |||||||||||| || | || ||||||||||| Sbjct 189866 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAG 189807 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || || |||||||| || |||||||| || ||||| || ||||| || || | ||| Sbjct 189806 AAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCA 189747 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 |||||||| || || || ||||| ||||||| ||| | | | | ||| || Sbjct 189746 CTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAAGACGTTGGGCGAAGGTGG-ACT- 189689 Query 50131 TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 50185 || ||| ||||| | | ||||| ||||||||||| | ||||| || || | Sbjct 189688 TCTTGTCGGCAATCCAGTGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCT 189629 Query 50186 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 50245 | |||||||| ||||||| | || | | || || | || || || || | | Sbjct 189628 CAATGGCATTGAAGAGATGTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGA 189569 Query 50246 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 50305 | || | || || || ||||| || || ||||| || |||||||| |||| | Sbjct 189568 GGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGG 189509 Query 50306 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGT 50365 |||| | ||||| || || | | ||||| || | | || || || || || |||| Sbjct 189508 CCTCTGGGATCTGGACCTCGCCAGAGAATCGCTCGACAAGGTTCTCGTTGACAATGCCGT 189449 Query 50366 CA 50367 || Sbjct 189448 CA 189447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264265928200