Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq87 89.7 4e-13 seq244 84.2 2e-11 >seq87 Length=177310 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42913 GTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCG 42972 ||||||||||| || | ||||| ||||| | ||||| |||| || | ||| |||||| Sbjct 65621 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTGCTTGCCG 65562 Query 42973 GCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTG 43032 || || |||| |||||| || |||| || | ||| || || || |||| ||| Sbjct 65561 GCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 65502 Query 43033 ACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTT 43092 || || | | ||||||| || ||| || || | || ||||| || || || || || Sbjct 65501 ACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 65442 Query 43093 TTCACAAAAATTTGCAT 43109 || || || || ||||| Sbjct 65441 TTGACGAAGATCTGCAT 65425 >seq244 Length=60485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | || | |||| ||||||||||| || | ||||| ||||| Sbjct 25896 GCCACCACGCAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 25837 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| || | ||| || || || ||||||||||||||||| |||| || Sbjct 25836 AAGAGTGCGACCGTCCTCGAGTTGCTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGG 25777 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| || || || |||| | ||||| || | | || || | ||||| Sbjct 25776 AATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAGGATTCGAC 25717 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || ||||| || || || || ||||| || Sbjct 25716 CTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATCTT 25666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381367252789290