Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq122 221 2e-52 seq19 141 1e-28 >seq122 Length=136518 Score = 221 bits (244), Expect = 2e-52 Identities = 742/1138 (65%), Gaps = 28/1138 (2%) Strand=Plus/Plus Query 71713 TTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTA 71772 || || || || ||||||| || ||| || | || || || ||||||||||| Sbjct 47744 TTGCAGACAGCCACCTCATCAGGGGCGGAGTACTCAATGATCTCGGTGCAAAGATTCGAG 47803 Query 71773 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 71832 | || || || | ||| | || |||||||| ||| || |||||| ||||| Sbjct 47804 CTGCGAATAGTACCAAGATTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTAAAGC 47863 Query 71833 ATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGC 71891 || || ||| | ||||| ||| |||||| || | ||| || | ||| | | || |||| Sbjct 47864 ATGAAGGGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGCGTACCACA-GCTTCTGAGC 47922 Query 71892 CTTTATTATATTCTTGTATCT-CTTTTCTCT--TTCGTA-TTGT-GTATATAATCGTTCG 71946 ||| || |||| | | | |||| |||||| || | ||| | | ||| Sbjct 47923 CTTAATC---TTCTGGCGGCCGCGACCCTCTGCTTCGTACTTCTCGTACAGGGCC--TCG 47977 Query 71947 AACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCAC 72006 ||||| || || || | | ||| ||||| || || || |||||||| | | |||| Sbjct 47978 AACTCATCGCCATAAACGTCAGCTAGACCAGGGCACTCGTTAGGACACATGAGGGTCCAC 48037 Query 72007 TCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 72066 ||||||| | | || |||||||| ||||||||||||||||| ||||| | || ||| Sbjct 48038 TCTCCATTCTTCTCAACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCCAGGAAGAGA 48097 Query 72067 TCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 72126 || | || | | ||||| || || |||||| |||||| |||||| | | || | Sbjct 48098 TCGCGGGCACGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCGAAAACA 48157 Query 72127 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGA 72186 || || ||||| || || | ||| ||||| | | | || || | ||||| || |||||| Sbjct 48158 TCCGAGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACCCTGA 48217 Query 72187 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCA 72246 |||| |||||| || |||||||| | || | | ||| || | ||| || || || | Sbjct 48218 TCTACGTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGAGGTG 48277 Query 72247 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATT 72306 || || || || | || || ||| | ||||| || | || ||||| || Sbjct 48278 CCGTTAGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGAGACCAATA 48337 Query 72307 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 72366 || || ||||| || ||||| | || || || | || || ||||| ||||| || Sbjct 48338 CCACCGGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCCTCAATG 48397 Query 72367 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 72426 ||||| ||| |||||| | || || || || | ||| | || || ||| Sbjct 48398 CTATCGTCCTTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTCCCAGCA 48457 Query 72427 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 72486 || || | || || ||||| || || || |||| ||||| || ||||| |||| | Sbjct 48458 TTGAAGAGAGTTGGGGAAGCATGAGTGAAGTATTTGCTAGACATGAGGTTGTAGGTCTGA 48517 Query 72487 ATAGCTGATTCTATATC----CCATTGATGTATTCCTACCGCGACACGCATTAACATATG 72542 || | || | ||| || |||| || || || |||||||| | |||||| Sbjct 48518 ATGACCTTCTCAACATCGTCGCCCCAGATG----CCGACAGCCACACGCATGATCATATG 48573 Query 72543 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 72602 ||| ||||| || |||||||||| | | || | | ||| ||| |||||||| || Sbjct 48574 CTGTGGTCTCTCCACGATCTTGTCGTCAAGCTTAAGTAGGTAAGATCGCTCCAAAGTCTT 48633 Query 72603 AAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTA 72660 || || || || | ||| ||||| |||| || || | || | || | | | Sbjct 48634 GAAGCCGAAGTATTGGTAGTTGAAA--TCTCTGTCATAGACGATGGCAGAGTCAAAGTCT 48691 Query 72661 TCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCC 72719 ||||||| | | | || | | | | | ||| ||||| || ||||| | ||| Sbjct 48692 TCCTTATGTCTCATGAC-ACACTCGTATGTCTCCTTAGAAATCATAGGAGATGGCTTCTT 48750 Query 72720 ATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttG 72778 || || || || ||||||| | | | || | || || | || | || || | Sbjct 48751 GTTCTTTGGGTTGACATAGTGGTAGAGGTCGCTGACGAC-AGACGACCATTGCTTCTTCG 48809 Query 72779 TTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 | | ||||||||| ||||| ||||| || | ||||| || |||||||| ||||| || Sbjct 48810 TCTGCTTGTGTAGGTTTGACACGGCAATACGTGCGGCAAGGATGGCATAGTCTGGGTG 48867 >seq19 Length=350955 Score = 141 bits (156), Expect = 1e-28 Identities = 374/568 (66%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || || ||||| ||| ||||||||||||||| | || | ||||||||| Sbjct 189866 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAG 189807 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || |||||||| || |||||||| || ||||| || || || || || | |||| Sbjct 189806 AAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCA 189747 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 |||||||| || || || || || ||||||||||| | | | || | ||| Sbjct 189746 CTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAAGACGTTGGGC-GAAGGTGGACT- 189689 Query 42236 TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 42290 || ||| ||||| | | ||||| ||||||||||| | ||||| || || | Sbjct 189688 TCTTGTCGGCAATCCAGTGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCT 189629 Query 42291 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAA 42350 | |||||||| ||||||| | || | | || || | || || || || | | Sbjct 189628 CAATGGCATTGAAGAGATGTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGA 189569 Query 42351 GACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGG 42410 | || | || || || ||||| || || ||||| || |||||||| |||| || Sbjct 189568 GGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGG 189509 Query 42411 CCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGT 42470 |||| | | ||| || || | | ||||| || | | || ||||| || || |||| Sbjct 189508 CCTCTGGGATCTGGACCTCGCCAGAGAATCGCTCGACAAGGTTCTCGTTGACAATGCCGT 189449 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA--- 42527 || || || || || || | | || || || |||| ||||| ||| Sbjct 189448 CAGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGAATTTCTCGTCATCGTTTAGGC 189389 Query 42528 ATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATG 42587 || |||| || | || ||| || |||| ||| | || || | ||||| || || | Sbjct 189388 GGTTGCTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCGGTCCAGAAGGAAG 189329 Query 42588 CTTCTGCCTTTTTATACATATTCCAGAT 42615 |||| ||| || ||||| | |||||| Sbjct 189328 CTTCGTGCTTCTTGTACATCTGCCAGAT 189301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134963433800