Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq19 201 2e-46
>seq19
Length=350955
Score = 201 bits (222), Expect = 2e-46
Identities = 559/847 (66%), Gaps = 29/847 (3%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||| | || ||||| ||||| | ||| ||| | |||||
Sbjct 189301 ATCTGGCAGATGTACAAGAAGCACGAAGCTTCCTTCTGGACCGCCGAGGAGATTGATCTA 189360
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT----AT 125134
|||||||| || |||| ||| | || | | || ||| ||||| || ||
Sbjct 189361 TCCAAGGATCTCCACGACTGGAGCAACCGCCTAAACGA---TGA-CGAGAAATTCTTCAT 189416
Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193
|| ||||| | |||||||| |||| || || || || |||||||| || || || ||
Sbjct 189417 CTCCCACATCCTCGCCTTCTTCGCCGCATCTGACGGCATTGTCAACGAGAACCTTGTCGA 189476
Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCA 125253
||||||||| ||| | || ||||||| ||||| ||||| ||||| ||||
Sbjct 189477 G-CGATTCTCTGGCGAGGTCCAGATCCCAGAGGCCCGATGCTTCTACGGCTTCCAGATCA 189535
Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313
|||| |||||| | ||||| || | ||||| || ||||||| ||||| || |
Sbjct 189536 TGATGGAGAACATCCACTCCGAGACTTACTCCCTCCTCATTGACACCTACATCAAGGAGC 189595
Query 125314 C-GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372
| || | | |||||| ||||| || || || || || | || | || || || |||
Sbjct 189596 CTGCCCAGAAGACACAT-CTCTTCAATGCCATTGAGACCATTCCTTGCATCCGCAAGAAG 189654
Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432
|| | |||| | | ||||| | ||| | ||||| | | |||| | | || |
Sbjct 189655 GCCGACTGGGCCCTGCACTGGATTGCCGACAAGAAGTCCACCTTCGCCCAACGTCTTATT 189714
Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492
|| |||||||| || ||||| |||||||| || || || ||||||| ||||||
Sbjct 189715 GCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGAGCCTTCGCTTCCATCTTCTGGCTC 189774
Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552
|||||||| || ||||||||||| ||||| | ||||| | || || || || |||
Sbjct 189775 AAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAACTCATCTCGCGTGATGAG 189834
Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAGTGCAG 125611
|| || ||| ||||| ||| || ||||| || || || | | | |
Sbjct 189835 GGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTCCCACCT----------CAACAACCG 189884
Query 125612 ATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTT 125671
|| || | || |||| || || | ||||||||||| | || || || |||||
Sbjct 189885 CCCCGGCAAGGACGTGGTCGAGAAGATCATCACCGATGCCGTCACCATTGAGCAGGAGTT 189944
Query 125672 TCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTA 125731
|| || || | || || | | | ||||||||| ||| || ||| ||||
Sbjct 189945 CCTGACGGAGGCTCTGCCCTGTGCCCTACTAGGCATGAACGCCAACCTCATGAAGCAGTA 190004
Query 125732 CATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAA 125788
||| ||||| || || || || || ||| | | | ||| || ||| | |||
Sbjct 190005 CATCGAGTTCGTCGCCGACCGCCTGCTG---GTGGCCCTCGGCAACGAGAAGGTGTACCG 190061
Query 125789 CGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848
| ||| || ||||| || |||||| | ||| || || | || ||||||||||| ||
Sbjct 190062 CTCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTCTT 190121
Query 125849 CGAGAAG 125855
|||||||
Sbjct 190122 CGAGAAG 190128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741054522063800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |