Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq19 201 2e-46 >seq19 Length=350955 Score = 201 bits (222), Expect = 2e-46 Identities = 559/847 (66%), Gaps = 29/847 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||| | || ||||| ||||| | ||| ||| | ||||| Sbjct 189301 ATCTGGCAGATGTACAAGAAGCACGAAGCTTCCTTCTGGACCGCCGAGGAGATTGATCTA 189360 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT----AT 125134 |||||||| || |||| ||| | || | | || ||| ||||| || || Sbjct 189361 TCCAAGGATCTCCACGACTGGAGCAACCGCCTAAACGA---TGA-CGAGAAATTCTTCAT 189416 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193 || ||||| | |||||||| |||| || || || || |||||||| || || || || Sbjct 189417 CTCCCACATCCTCGCCTTCTTCGCCGCATCTGACGGCATTGTCAACGAGAACCTTGTCGA 189476 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCA 125253 ||||||||| ||| | || ||||||| ||||| ||||| ||||| |||| Sbjct 189477 G-CGATTCTCTGGCGAGGTCCAGATCCCAGAGGCCCGATGCTTCTACGGCTTCCAGATCA 189535 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| |||||| | ||||| || | ||||| || ||||||| ||||| || | Sbjct 189536 TGATGGAGAACATCCACTCCGAGACTTACTCCCTCCTCATTGACACCTACATCAAGGAGC 189595 Query 125314 C-GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 | || | | |||||| ||||| || || || || || | || | || || || ||| Sbjct 189596 CTGCCCAGAAGACACAT-CTCTTCAATGCCATTGAGACCATTCCTTGCATCCGCAAGAAG 189654 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432 || | |||| | | ||||| | ||| | ||||| | | |||| | | || | Sbjct 189655 GCCGACTGGGCCCTGCACTGGATTGCCGACAAGAAGTCCACCTTCGCCCAACGTCTTATT 189714 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || |||||||| || ||||| |||||||| || || || ||||||| |||||| Sbjct 189715 GCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGAGCCTTCGCTTCCATCTTCTGGCTC 189774 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||| || ||||||||||| ||||| | ||||| | || || || || ||| Sbjct 189775 AAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAACTCATCTCGCGTGATGAG 189834 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAGTGCAG 125611 || || ||| ||||| ||| || ||||| || || || | | | | Sbjct 189835 GGTCTGCACACCGACTTCGCCTGCCTGCTGTTCTCCCACCT----------CAACAACCG 189884 Query 125612 ATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTT 125671 || || | || |||| || || | ||||||||||| | || || || ||||| Sbjct 189885 CCCCGGCAAGGACGTGGTCGAGAAGATCATCACCGATGCCGTCACCATTGAGCAGGAGTT 189944 Query 125672 TCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTA 125731 || || || | || || | | | ||||||||| ||| || ||| |||| Sbjct 189945 CCTGACGGAGGCTCTGCCCTGTGCCCTACTAGGCATGAACGCCAACCTCATGAAGCAGTA 190004 Query 125732 CATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAA 125788 ||| ||||| || || || || || ||| | | | ||| || ||| | ||| Sbjct 190005 CATCGAGTTCGTCGCCGACCGCCTGCTG---GTGGCCCTCGGCAACGAGAAGGTGTACCG 190061 Query 125789 CGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848 | ||| || ||||| || |||||| | ||| || || | || ||||||||||| || Sbjct 190062 CTCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTCTT 190121 Query 125849 CGAGAAG 125855 ||||||| Sbjct 190122 CGAGAAG 190128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054522063800