Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq244 95.1 1e-14
seq87 84.2 2e-11
>seq244
Length=60485
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582
|| || ||||||||||| ||||||||||| || | | | || || ||||||| || ||
Sbjct 25871 TGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTG-CGACCGTCCTCGAGTTG 25813
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| || || |||| || ||||| || || || | || ||||||||| || ||
Sbjct 25812 CTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTT 25753
Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700
| ||||| | | || |||||||| | || || ||| | || ||||| || ||
Sbjct 25752 CGACTTGACGTTGTCG--ATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCA 25695
Query 48701 GTGAGAGTTTTCACAAAAATCTGCATCGTGTC 48732
|||||||| || || || ||||||||| ||||
Sbjct 25694 GTGAGAGTCTTGACGAAGATCTGCATCTTGTC 25663
>seq87
Length=177310
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582
|||||| ||||||||||| || |||||||| || | | || |||| || || ||
Sbjct 65628 ATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTG 65569
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| ||| || | || | |||||||| || || | || ||||||||| || ||
Sbjct 65568 CTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTT 65509
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||||| | | ||||| ||| |||||||| ||| | || || || || || ||
Sbjct 65508 GGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGT 65449
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
||| || || || || ||||||||
Sbjct 65448 GAGGGTCTTGACGAAGATCTGCAT 65425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421248607330505
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |