Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq18 111 2e-20 seq198 104 4e-18 >seq18 Length=356566 Score = 111 bits (122), Expect = 2e-20 Identities = 86/100 (86%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||||||| |||||| | || || |||||||| || ||||| ||||| |||| Sbjct 43667 CGCCAAGCGTCATCGCAAGATCT-TGCGTGACAACATCCAGGGTATCACAAAGCCCGCTA 43725 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||| ||||| |||||||||||||| ||||||||| |||| Sbjct 43726 TCCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 43765 >seq198 Length=84462 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | ||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 55847 GCCAAGCGCCACCGTAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 55789 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 || ||||| |||||||||||||| ||||||||| |||||| Sbjct 55788 TCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 55748 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| || | ||| | ||| ||||||| || || || | ||||| Sbjct 55688 TGATCTACGAAGAGACCCGAGGTGTCCTCAAGTCCTTCCTCGAGGGTGTCATTCGTGATG 55629 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| ||||| ||| | || ||||||| | Sbjct 55628 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACTTCCCTCGACGTCGTCTACG 55569 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| || || ||||| | | || ||||| || ||||| Sbjct 55568 CTCTGAAGCGACAGGGCCGCACCCTGTACGGTTTCGGTGGTTAA 55525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074738274965