Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq122 233 2e-56
seq19 149 8e-31
>seq122
Length=136518
Score = 233 bits (258), Expect = 2e-56
Identities = 738/1133 (65%), Gaps = 18/1133 (2%)
Strand=Plus/Plus
Query 62907 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 62966
|| || || || ||||||| || | | || | || ||||| |||||||||||
Sbjct 47744 TTGCAGACAGCCACCTCATCAGGGGCGGAGTACTCAATGATCTCGGTGCAAAGATTCGAG 47803
Query 62967 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63026
| ||||| || | ||| | || |||||||| ||| || |||||| |||||
Sbjct 47804 CTGCGAATAGTACCAAGATTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTAAAGC 47863
Query 63027 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGC 63085
||||| ||| | ||||| ||| |||||| || | ||| || | ||| | | || ||||
Sbjct 47864 ATGAAGGGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGCGTACCACA-GCTTCTGAGC 47922
Query 63086 CTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 63145
||| || | | | | ||| |||||| |||| ||||||||
Sbjct 47923 CTTAATCTTCTGGCGGCCGCGACCCTCTGCTTCGTACTTCTCGTACAGGGCCTCGAACTC 47982
Query 63146 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 63205
|| || |||| | | | ||||| || || | |||||||| | | |||||||||
Sbjct 47983 ATCGCCATAAACGTCAGCTAGACCAGGGCACTCGTTAGGACACATGAGGGTCCACTCTCC 48042
Query 63206 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 63265
| | || || |||||||| ||||||||||||||||| ||||| | || ||||| |
Sbjct 48043 ATTCTTCTCAACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCCAGGAAGAGATCGCG 48102
Query 63266 GGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 63325
|| | | |||||| || || |||||| |||||| |||||| | | || ||| ||
Sbjct 48103 GGCACGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCGAAAACATCCGA 48162
Query 63326 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 63385
||||| || || | ||| ||||| | | | ||||| | ||||| || ||||||||||
Sbjct 48163 GTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACCCTGATCTAC 48222
Query 63386 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATT 63445
|||||| || |||||||| | || | | ||| || | ||| ||||| || | || ||
Sbjct 48223 GTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTT 48282
Query 63446 GGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCC 63505
|| || | || || ||| | ||||| || || ||||| || || ||
Sbjct 48283 AGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGAGACCAATACCACC 48342
Query 63506 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATC 63565
||||| || ||||| | || || || | ||||| ||||||||||| ||||||||
Sbjct 48343 GGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCCTCAATGCTATC 48402
Query 63566 ATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 63625
|| |||||| | || || || || | ||| | || || ||||| ||
Sbjct 48403 GTCCTTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTCCCAGCATTGAA 48462
Query 63626 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63685
| || || ||||| || || || |||| ||| | || ||||| |||| ||| |
Sbjct 48463 GAGAGTTGGGGAAGCATGAGTGAAGTATTTGCTAGACATGAGGTTGTAGGTCTGAATGAC 48522
Query 63686 TGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAG 63741
|| | ||| || |||| || || || |||||||| | ||| ||||| |
Sbjct 48523 CTTCTCAACATCGTCGCCCCAGATG----CCGACAGCCACACGCATGATCATATGCTGTG 48578
Query 63742 GTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 63801
|||| || |||||||||| || | || | | ||| ||| |||||||| || || |
Sbjct 48579 GTCTCTCCACGATCTTGTCGTCAAGCTTAAGTAGGTAAGATCGCTCCAAAGTCTTGAAGC 48638
Query 63802 CAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859
| || || | ||| ||||| |||| || || | || | |||| | | |||||
Sbjct 48639 CGAAGTATTGGTAGTTGAAA--TCTCTGTCATAGACGATGGCAGAGTCAAAGTCTTCCTT 48696
Query 63860 ATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTT 63918
|| | | | || | | | | | ||| ||||| || ||||| | ||| || |
Sbjct 48697 ATGTCTCATGAC-ACACTCGTATGTCTCCTTAGAAATCATAGGAGATGGCTTCTTGTTCT 48755
Query 63919 TAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCC 63977
| || || ||||||| | | | || | || || | || | || || || | |
Sbjct 48756 TTGGGTTGACATAGTGGTAGAGGTCGCTGACGAC-AGACGACCATTGCTTCTTCGTCTGC 48814
Query 63978 TTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030
|||||||| ||||| ||||| || | ||||| || |||||||| || || ||
Sbjct 48815 TTGTGTAGGTTTGACACGGCAATACGTGCGGCAAGGATGGCATAGTCTGGGTG 48867
>seq19
Length=350955
Score = 149 bits (164), Expect = 8e-31
Identities = 378/569 (66%), Gaps = 12/569 (2%)
Strand=Plus/Minus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| || || ||||| ||| |||||||||||| || | || |||||||||||
Sbjct 189866 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAG 189807
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| || || |||||||| || |||||||| || ||||| || ||||||||||| | ||||
Sbjct 189806 AAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCA 189747
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33474
|||||||| || || || || || ||||||||||| | | | || | ||
Sbjct 189746 CTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAAGACGTTGGGC-GAAGGTGGACT- 189689
Query 33475 TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529
|| ||| ||||| | | ||||| ||||||||||| | ||||| || || |
Sbjct 189688 TCTTGTCGGCAATCCAGTGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCT 189629
Query 33530 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33589
| |||||||| ||||||| | || | | || || | || || || || | |
Sbjct 189628 CAATGGCATTGAAGAGATGTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGA 189569
Query 33590 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33649
| || | || || || ||||| || || ||||| || |||||||| |||| |
Sbjct 189568 GGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGG 189509
Query 33650 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGT 33709
|||| | ||||| || || | | ||||| || | | || || || || || ||||
Sbjct 189508 CCTCTGGGATCTGGACCTCGCCAGAGAATCGCTCGACAAGGTTCTCGTTGACAATGCCGT 189449
Query 33710 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA-- 33766
|| || || || || || | | || || || |||| ||||| | || |||
Sbjct 189448 CAGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGAATTTCTCGTCATCGT-TTAGG 189390
Query 33767 -GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGAT 33825
| || |||| || | || ||| || |||| ||| | || || | ||||| || ||
Sbjct 189389 CGGTTGCTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCGGTCCAGAAGGAA 189330
Query 33826 GCCTCTGCCTTTTTATACATGTTCCAGAT 33854
|| || ||| || ||||| | ||||||
Sbjct 189329 GCTTCGTGCTTCTTGTACATCTGCCAGAT 189301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622943267645800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |