Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq244 98.7 9e-16
seq87 84.2 2e-11
seq5 84.2 2e-11
>seq244
Length=60485
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || ||||| || ||||| | |||||| | ||||| || | |
Sbjct 26416 ATGCAGATTTTTGTCAAGACATTGACGGGAAAGACTATTACCCTAGAAGTTGAATCTTCC 26475
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || || |||||| ||||| |||||||| ||||| |||||
Sbjct 26476 GACACCATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAG 26535
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| | || || | || || ||||| || ||||||| | | | | |||||||| ||
Sbjct 26536 CAACGTCTCATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCTTGAGCGATTACAAT 26595
Query 24171 ATTCAAAAAGAATCTAC 24187
|| || || ||||| ||
Sbjct 26596 ATCCAGAAGGAATCCAC 26612
Score = 89.7 bits (98), Expect = 4e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074
|| ||||| | || ||| | || |||||| | |||||||||||| | || ||
Sbjct 25984 ACCGGAAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAATGTTAAGTCG 26043
Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134
||||| ||||| || || || ||||| || || ||| || |||||| || |||||||
Sbjct 26044 AAGATCCAAGACAAGGAGGGTATTCCTCCTGACCAGCAGCGATTGATTTTCGCCGGCAAG 26103
Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193
|| || || |||| | ||| | | ||| || |||||||| || ||||| || ||||
Sbjct 26104 CAGCTTGAGGATGGCCGAACCCTGTCCGACTACAACATTCAGAAGGAATCGACTCTTCA 26162
>seq87
Length=177310
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || | || || || | || ||| | || || ||| | | |
Sbjct 65425 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTAGC 65484
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| ||||| ||||| || || || || ||||| ||
Sbjct 65485 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 65544
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| ||||||| | || |||||||||||||||||| | | | | || ||| || |||
Sbjct 65545 CAGCGACTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACTCTCTCCGACTACAAC 65604
Query 24171 ATTCAAAAAGA 24181
|| || || ||
Sbjct 65605 ATCCAGAAGGA 65615
>seq5
Length=467666
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086
|| ||| |||| || ||| | |||||||||||| | ||||| ||||| |||
Sbjct 48502 ATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGAC 48561
Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146
|| || ||||| || ||||| |||||| | ||||| | || |||||||||||| || ||
Sbjct 48562 AAGGAGGGCATTCCCCCCGACCAACAGCGTCTGATCTTCGCCGGCAAGCAACTTGAGGAC 48621
Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187
| | ||| | ||| || ||||| || ||||| || ||
Sbjct 48622 GGCCGAACTCTTTCCGACTACAACATCCAGAAAGAGTCCAC 48662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429933353878275
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |