Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq244 98.7 9e-16 seq87 84.2 2e-11 seq5 84.2 2e-11 >seq244 Length=60485 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||| || ||||| | |||||| | ||||| || | | Sbjct 26416 ATGCAGATTTTTGTCAAGACATTGACGGGAAAGACTATTACCCTAGAAGTTGAATCTTCC 26475 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| |||||||| ||||| ||||| Sbjct 26476 GACACCATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAG 26535 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || || ||||| || ||||||| | | | | |||||||| || Sbjct 26536 CAACGTCTCATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCTTGAGCGATTACAAT 26595 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 26596 ATCCAGAAGGAATCCAC 26612 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 || ||||| | || ||| | || |||||| | |||||||||||| | || || Sbjct 25984 ACCGGAAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCATCGACAATGTTAAGTCG 26043 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 ||||| ||||| || || || ||||| || || ||| || |||||| || ||||||| Sbjct 26044 AAGATCCAAGACAAGGAGGGTATTCCTCCTGACCAGCAGCGATTGATTTTCGCCGGCAAG 26103 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 || || || |||| | ||| | | ||| || |||||||| || ||||| || |||| Sbjct 26104 CAGCTTGAGGATGGCCGAACCCTGTCCGACTACAACATTCAGAAGGAATCGACTCTTCA 26162 >seq87 Length=177310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| | || || ||| | | | Sbjct 65425 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTAGC 65484 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || ||||| || Sbjct 65485 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 65544 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| ||||||| | || |||||||||||||||||| | | | | || ||| || ||| Sbjct 65545 CAGCGACTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACTCTCTCCGACTACAAC 65604 Query 24171 ATTCAAAAAGA 24181 || || || || Sbjct 65605 ATCCAGAAGGA 65615 >seq5 Length=467666 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| || ||| | |||||||||||| | ||||| ||||| ||| Sbjct 48502 ATCACCCTCGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGAC 48561 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || ||||| || ||||| |||||| | ||||| | || |||||||||||| || || Sbjct 48562 AAGGAGGGCATTCCCCCCGACCAACAGCGTCTGATCTTCGCCGGCAAGCAACTTGAGGAC 48621 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | ||| | ||| || ||||| || ||||| || || Sbjct 48622 GGCCGAACTCTTTCCGACTACAACATCCAGAAAGAGTCCAC 48662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429933353878275