Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq122 230 3e-55 seq19 131 2e-25 >seq122 Length=136518 Score = 230 bits (254), Expect = 3e-55 Identities = 737/1133 (65%), Gaps = 18/1133 (2%) Strand=Plus/Plus Query 62762 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 62821 || || || || ||||||| || | | || | || ||||| ||||||||||| Sbjct 47744 TTGCAGACAGCCACCTCATCAGGGGCGGAGTACTCAATGATCTCGGTGCAAAGATTCGAG 47803 Query 62822 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 62881 | || || || | ||| | || |||||||| ||| || |||||| ||||| Sbjct 47804 CTGCGAATAGTACCAAGATTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTAAAGC 47863 Query 62882 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGC 62940 ||||| ||| | ||||| ||| |||||| || | ||| || | ||| | | || |||| Sbjct 47864 ATGAAGGGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGCGTACCACA-GCTTCTGAGC 47922 Query 62941 CTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 63000 ||| || | | | ||| |||||| |||| |||||||| Sbjct 47923 CTTAATCTTCTGGCGGCCGCGACCCTCTGCTTCGTACTTCTCGTACAGGGCCTCGAACTC 47982 Query 63001 GTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 63060 || || |||| | | || ||||| || || | |||||||| | | ||||||||| Sbjct 47983 ATCGCCATAAACGTCAGCTAGACCAGGGCACTCGTTAGGACACATGAGGGTCCACTCTCC 48042 Query 63061 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 63120 | | || || |||||||| ||||||||||||||||| ||||| | || ||||| | Sbjct 48043 ATTCTTCTCAACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCCAGGAAGAGATCGCG 48102 Query 63121 GGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 63180 || | | |||||| || || |||||| |||||| |||||| | | || ||| || Sbjct 48103 GGCACGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCGAAAACATCCGA 48162 Query 63181 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 63240 ||||| || || | ||| ||||| | | | ||||| | ||||| || |||||||||| Sbjct 48163 GTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACCCTGATCTAC 48222 Query 63241 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATT 63300 |||||| || |||||||| | || | | ||| || | ||| || || || || || || Sbjct 48223 GTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTT 48282 Query 63301 GGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCC 63360 || || | || || ||| | ||||| || || ||||| || || || Sbjct 48283 AGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGAGACCAATACCACC 48342 Query 63361 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 63420 ||||| || ||||| | || || || | || || ||||| ||||| || ||||| Sbjct 48343 GGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCCTCAATGCTATC 48402 Query 63421 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 63480 ||| |||||| | || || || || | ||| | || || ||||| || Sbjct 48403 GTCCTTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTCCCAGCATTGAA 48462 Query 63481 TAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63540 | || || ||||| ||||| || |||| ||| | || ||||| |||| ||| | Sbjct 48463 GAGAGTTGGGGAAGCATGAGTGAAGTATTTGCTAGACATGAGGTTGTAGGTCTGAATGAC 48522 Query 63541 TGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAG 63596 || | ||| || |||| || || || |||||||| | ||| ||||| | Sbjct 48523 CTTCTCAACATCGTCGCCCCAGATG----CCGACAGCCACACGCATGATCATATGCTGTG 48578 Query 63597 GTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 63656 |||| || |||||||||| || | || | | ||| ||| |||||||| || || | Sbjct 48579 GTCTCTCCACGATCTTGTCGTCAAGCTTAAGTAGGTAAGATCGCTCCAAAGTCTTGAAGC 48638 Query 63657 CAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 | || || | ||| ||||| |||| || || | || | |||| | | ||||| Sbjct 48639 CGAAGTATTGGTAGTTGAAA--TCTCTGTCATAGACGATGGCAGAGTCAAAGTCTTCCTT 48696 Query 63715 ATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATAGGAAAATGTTTCCCATTTT 63773 || | | | || ||| | | | ||| ||||| |||||| | | ||| || | Sbjct 48697 ATGTCTCATGAC-ACACTCGTATGTCTCCTTAGAAATCATAGGAGATGGCTTCTTGTTCT 48755 Query 63774 TAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCT 63832 | || |||||||||| | | | || | || || | || | || || || | Sbjct 48756 TTGGGTTGACATAGTGGTAGAGGTCGCTGACGAC-AGACGACCATTGCTTCTTCGTCTGC 48814 Query 63833 TTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 63885 |||||||| ||||| ||||| || | ||||| || |||||||| || || || Sbjct 48815 TTGTGTAGGTTTGACACGGCAATACGTGCGGCAAGGATGGCATAGTCTGGGTG 48867 >seq19 Length=350955 Score = 131 bits (144), Expect = 2e-25 Identities = 374/569 (66%), Gaps = 12/569 (2%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || || ||||| ||| ||| |||||||| || | || | ||||||||| Sbjct 189866 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAG 189807 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || |||||||| || |||||||| || ||||| || ||||| || || | |||| Sbjct 189806 AAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCA 189747 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 ||||| || || || || || || ||||||||||| | | | || | || Sbjct 189746 CTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAAGACGTTGGGC-GAAGGTGGACT- 189689 Query 32832 TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 || ||| ||||| | | ||||| ||||||||||| | ||||| || |||| Sbjct 189688 TCTTGTCGGCAATCCAGTGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCT 189629 Query 32887 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 32946 | || ||||| ||||||| | || | | || || | || || ||||| | | Sbjct 189628 CAATGGCATTGAAGAGATGTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGA 189569 Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006 | || | || || || ||||| || || || || || ||||||||||||| | Sbjct 189568 GGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGG 189509 Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066 |||| | ||||| || || | | ||||| || | | || || || || || |||| Sbjct 189508 CCTCTGGGATCTGGACCTCGCCAGAGAATCGCTCGACAAGGTTCTCGTTGACAATGCCGT 189449 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA-- 33123 || || || || || || | | || || || |||| ||||| | || ||| Sbjct 189448 CAGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGAATTTCTCGTCATCGT-TTAGG 189390 Query 33124 -GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 33182 | || |||| || | || ||| || |||| ||| | || || | ||||| || || Sbjct 189389 CGGTTGCTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCGGTCCAGAAGGAA 189330 Query 33183 GCCTCTGCCTTTTTATACATATTCCAGAT 33211 || || ||| || ||||| | |||||| Sbjct 189329 GCTTCGTGCTTCTTGTACATCTGCCAGAT 189301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628000198000