Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq122 199 5e-46 seq19 141 1e-28 >seq122 Length=136518 Score = 199 bits (220), Expect = 5e-46 Identities = 845/1312 (64%), Gaps = 31/1312 (2%) Strand=Plus/Plus Query 113915 AACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTC 113973 ||||| || |||||| || | ||| ||||| |||| ||||| ||||| |||||||| Sbjct 47174 AACTCGCCAGCGAGGACACGGCG-AGAGTAGATGTTGGAAGTGTAAGGCTCGAAGCACTC 47232 Query 113974 ATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||||||||||||||| |||| ||| ||| ||||||||||| || | | | |||||| Sbjct 47233 ATTGTTACCCAAGATCTGGGATGTGCTGGCCGTGGGCATGGGGGCGACCAACAAGCTGTT 47292 Query 114034 ACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT 114093 || | ||| |||| | | || | ||||||||| | |||||| | | || Sbjct 47293 GCGCACACCATTTTGCTTGATTTGCTCCTTGAGGCTGGTCCAGTCCCAAAGATCCGATGG 47352 Query 114094 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGT 114153 | | |||||| || | || ||||| || || ||| | || || ||||| | || Sbjct 47353 GGTGACATTCCACATGTCGTATTGAAGGATGCCCTGCGAGACGGGAGAACCCTCGTAGGT 47412 Query 114154 CTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 114213 ||| ||||| || |||| || | || | | ||| | ||| || || || || Sbjct 47413 AGAGTAAGGGCCTTCGACCTTGGCAATCTCCGTGGACGCAGTCAAGGCGGCATGGTAGAT 47472 Query 114214 TGTCTCAAAAA--TGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 114271 ||||| || | ||| | || |||| | | ||||| || ||||| | | || Sbjct 47473 CGTCTCGAAGATCTGCTTG-TTTAATTGTC-TAGCCTCTGGTGACTCAAAAGGCATACGC 47530 Query 114272 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 114331 | | ||| ||| || ||||| || ||||| || ||||| || || |||| ||| Sbjct 47531 AATGCCAAGAATGTATCAGCAAGACCCTGAACACCAAGACCAATGGGACGGTGTCGCATG 47590 Query 114332 TTAGACTTTCGAGCGGTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 114390 || || || || ||| ||||| ||| |||| ||| |||| || || | ||| Sbjct 47591 TTGCTGTTACGGGC-CTCTGGGACGGGGTAATAATTGACATCAATAATTCTGTTCAAATT 47649 Query 114391 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 114450 | ||| || | || | ||||| | ||| | | | ||| || ||| || | Sbjct 47650 GTGAACGACGACTTGGGTAACCTCATGCAACTTCTGGAAGTCATAAGTGC---CTTCGTT 47706 Query 114451 ATTGACATACTTAGGAAGG----GCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 114506 || | || || |||| || |||| || || | || || |||| |||||| Sbjct 47707 ATAGTCA-ACAAAGGACGGCAACGCGAGGGAAGCTAAGTTGCAGACAGCCACCTCATCAG 47765 Query 114507 TATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCT 114566 | | |||||| || || || || || | ||| || || ||| || || | |||| Sbjct 47766 GGGCGGAGTACTCAATGATCTCGGTGCAAAGATTCGAGCTGCGAATAGTACCAAGATTCT 47825 Query 114567 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCG 114626 | || || ||| ||| || |||||||||||||||| | || | || ||||| | Sbjct 47826 TCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAAGGGATTTCCAGTCTCAG 47885 Query 114627 TTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCAC-AGTGGCGTTGGCTCG 114684 | || | || |||||| || | ||| | | || | | || | ||||| | | || Sbjct 47886 TCTGAGCCTCGAGAATGGCGTACCACAGCTTCTGAGCCTTAATCTTCTGGCG--GCCGCG 47943 Query 114685 CCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG 114744 ||||| | |||||||| ||| ||||| || ||||| || || | || | || Sbjct 47944 ACCCTCTGCTTCGTACTTCTCGTACAGGGCCTCGAACTCATCGCCATAAACGTCAGCTAG 48003 Query 114745 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCAT 114804 || || || | || || | ||| | ||| | ||| || ||||||||| ||||| Sbjct 48004 ACCAGGGCACTCGTTAGGACACATGAGGGTCCACTCTCCATTCTTCTCAACACGTTTCAT 48063 Query 114805 GAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 114864 |||||| || || ||||||||||| ||||||||| || ||| |||| || | || Sbjct 48064 GAAGAGATCAGGAATCCAGAGAGCCAGGAAGAGATCGCGGGCACGAACTTCCTCCTTGCC 48123 Query 114865 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 114924 || || || | || | || || | | ||||| |||||| || || ||||| | Sbjct 48124 ATGGTTCTTTCGAAGATCAAGGAACTCGAAAACATCCGAGTGCCAAGGCTCGAGGTAGAT 48183 Query 114925 CGCGATTG-ACC---CCTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAA 114980 |||| | ||| || | | ||| |||| | ||| || || || ||| ||| | Sbjct 48184 GGCGAAAGCACCAGGTCTCTTGTTG-CCACCCTGATCTACGTATCTTGCAGTGTTATTGA 48242 Query 114981 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGA 115038 | || || ||||| || | || || | || ||| || || || || || ||| Sbjct 48243 AGACACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTTAGTGCCAGCAATGTATGAGC 48302 Query 115039 CTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 115098 | | | || | || ||||||| | ||||||||| || ||| ||| ||||| Sbjct 48303 C--AGTAGCACGGATGCGGTGGATGTTGAGACCAATACCACCGGCCATCTTGGAGATCAT 48360 Query 115099 CGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAG 115158 || || | |||| || ||||||| || || || || |||| | ||| || Sbjct 48361 GGCACAAGTCTTGAGGGTGTCGTAGATACCCTCAATGCTATCGTCCTTCATGTCGACGAG 48420 Query 115159 GAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTTGG 115209 |||||| ||| | || ||||| ||||| ||||| |||||||| ||||| Sbjct 48421 GAAGCAAGACGAGAGCTG-GGCCTGGGGTGTCCCAGCATTGAAGAGAGTTGG 48471 >seq19 Length=350955 Score = 141 bits (156), Expect = 1e-28 Identities = 348/517 (67%), Gaps = 23/517 (4%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| |||||||| ||||| ||||||||||| || |||||| ||| || ||||||||||| Sbjct 189843 GTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAGAAGGTCAGACCGGGCATGAGACC 189784 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || | | || | || ||||||||| ||||| ||| Sbjct 189783 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCACTGAAGAAGATACCCTCAACAGC 189724 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACT--TTGT-GTCAAACCACTTCAT 126234 ||||| |||| ||||| | || |||| | |||| |||| | ||| ||| | || Sbjct 189723 GGCGAAGGCAATAAGACGTTGGGCGAAGGTG---GACTTCTTGTCGGCAATCCAGTGCAG 189667 Query 126235 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 126294 ||||| | ||||| || ||| || || | ||||| || || | ||||| | | Sbjct 189666 GGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCATTGAAGAGATGTGT 189607 Query 126295 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGAC 126354 ||| | | || || |||||||| | || ||||| || || || ||| ||||| Sbjct 189606 CTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGGGAGTAAGTCTCGGAGTGGAT 189547 Query 126355 CAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 126413 | | ||| || | ||| | ||||||| | || || || ||||| ||||| Sbjct 189546 GTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGGGCCTCTGGGATCTGGACCTCGC 189488 Query 126414 CGGCAAAATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACG 126470 | | | ||| | | || | ||||| ||||| || || || | || || || | Sbjct 189487 CAG-AGAATCG--CTCGACAAGGTTCTCGTTGACAATGCCGTCAGATGCGGCGAAGAAGG 189431 Query 126471 CCAGGATAT---ACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGT 126524 | ||||| | | | | |||||||| ||| ||||| | || | ||||||||| Sbjct 189430 CGAGGATGTGGGAGATGAAGAATTTCTCGTCA---TCGTTTAGGCGGTTGCTCCAGTCGT 189374 Query 126525 CAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 |||||||| || ||||| | |||||| || ||||| Sbjct 189373 GGAGATCCTTGGATAGATCAATCTCCTCGGCGGTCCA 189337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597349829205400