Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq87 125 8e-24 seq244 113 5e-20 >seq87 Length=177310 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || ||||| || | ||||| || |||| || || ||||| || Sbjct 65621 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTGCTTGCCG 65562 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 ||||| || |||||||||||||||| || | | |||||||||| ||| || ||| Sbjct 65561 GCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 65502 Query 42132 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | | | | |||||||| || ||||| || | ||||| || |||||||| || ||| Sbjct 65501 ACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 65442 Query 42192 TTTACAAAGATTTGCAT 42208 || || ||||| ||||| Sbjct 65441 TTGACGAAGATCTGCAT 65425 >seq244 Length=60485 Score = 113 bits (124), Expect = 5e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| ||||| ||||| || | ||||| || |||| || || ||||| ||| Sbjct 25865 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGTTGCTTTCCA 25806 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 ||||| || | |||||| ||||||| || | | |||||||||| ||| || ||| Sbjct 25805 GCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 25746 Query 42132 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 | ||| | | | || || ||||| || || | |||||||| ||||| || || || Sbjct 25745 A-CGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGT 25687 Query 42191 CTTTACAAAGATTTGCATTTT 42211 ||| || ||||| ||||| || Sbjct 25686 CTTGACGAAGATCTGCATCTT 25666 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || ||| || || | || || | ||||||||| || || Sbjct 26379 CTCCTTCTGAATGTTGTAGTCGCTCAGCGTTCGGCCATCCTCCAACTGCTTACCCGCAAA 26320 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || ||||| || ||||||| || | | |||||||||| ||| || ||||| ||| Sbjct 26319 GATAAGTCGTTGTTGGTCGGGCGGGATTCCCTCCTTGTCCTGGATCTTGGATTTGA-CGT 26261 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| || | ||||| || ||||| || || ||||| | Sbjct 26260 TGTCGATTGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTTGCCGGTGAGGGTCTTCA 26201 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 26200 CGAAGATTTGCAT 26188 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | ||||| || | ||| ||||| || ||||||||||| | Sbjct 26642 CCTCCACGGAGACGGAGAACCAAGTGGAGCGTGGATTCCTTCTGGATATTGTAATCGCTC 26583 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || ||||||||||||||||| ||||| || ||||| || | || Sbjct 26582 AAGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGGAGGA 26523 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | || ||||||||| ||| | || | | ||| | | | |||||| ||||| || Sbjct 26522 ATGCCTTCCTTGTCC-TGAATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCAAC 26464 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || || || || ||||| | ||||| ||||| || ||||| Sbjct 26463 TTCTAGGGTAATAGTCTTTCCCGTCAATGTCTTGACAAAAATCTGCAT 26416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209370969200