Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq122 185 9e-42 >seq122 Length=136518 Score = 185 bits (204), Expect = 9e-42 Identities = 491/738 (67%), Gaps = 14/738 (2%) Strand=Plus/Minus Query 93896 CCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-G 93954 |||| || || ||||| || ||||| || | | ||| | || || || ||||| | | Sbjct 48473 CCCCAACTCTCTTCAATGCTGGGACACCCCAGGCCCAGCTCTCGTCTTGCTTCCTCGTCG 48414 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 || | |||| ||| ||| || || | ||||| ||||||| ||||| | ||| Sbjct 48413 AC-ATGAAGGACGATAGCATTGAGGGTATCTACGACACCCTCAAGACTTGTGCCATGATC 48355 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074 || || || || || || || ||| ||||| | | ||||| | || || ||| Sbjct 48354 TCCAAGATGGCCGGTGGTATTGGTCTCAACATCCACCGCATCCGTGCTACTGGCTCATAC 48295 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || || || || |||||||| |||||| | || || ||||| || |||||||| ||| Sbjct 48294 ATTGCTGGCACTAACGGCACCTCGAACGGCATTGTACCCATGCTACGTGTCTTCAATAAC 48235 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || | ||||| || |||||||| | ||| ||| ||||||| |||| ||| Sbjct 48234 ACTGCAAGATACGTAGATCAGGGTGGCAACAAGAGACCTGGTGCTTTCGCCATCTACCTC 48175 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 ||||| |||||| |||| || | ||| | || || ||||||||||| ||||| || Sbjct 48174 GAGCCTTGGCACTCGGATGTTTTCGAGTTCCTTGATCTTCGAAAGAACCATGGCAAGGAG 48115 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 | | ||| | || |||||| ||||||||| | || || || || |||||||| Sbjct 48114 GAAGTTCGTGCCCGCGATCTCTTCCTGGCTCTCTGGATTCCTGATCTCTTCATGAAACGT 48055 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 || ||||| || | |||| || | ||||| || || || || || || | ||| Sbjct 48054 GTTGAGAAGAATGGAGAGTGGACCCTCATGTGTCCTAACGAGTGCCCTGGTCTAGCTGAC 47995 Query 94375 GTTTGTGG--ATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCC 94431 |||| ||| || | ||| || | | |||| | |||||| | |||| | |||| Sbjct 47994 GTTTATGGCGAT-GAGTTC-GAGGCCCTGTACGAGAAGTACGAAGCAGAGGGTCGCGGCC 47937 Query 94432 AG--GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 |||| ||| || || |||||||||| | || | || | ||| |||| Sbjct 47936 GCCAGAAGATTAAGG---CTCAGAAGCTGTGGTACGCCATTCTCGAGGCTCAGACTGAGA 47880 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 | || | |||| ||| | | |||||| | ||| |||| |||| |||||| || | Sbjct 47879 CTGGAAATCCCTTCATGCTTTACAAGGATCACTG-CAACCGCAAGAGTAACCAGAAGAAT 47821 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || || ||||||||||| ||||||||||| | ||||| | | || || Sbjct 47820 CTTGGTACTATTCGCAGCTCGAATCTTTGCACCGAGATCATTGAGTACTCCGCCCCTGAT 47761 Query 94609 GAGATTGCTGTGTGTAAC 94626 ||| | ||||| || ||| Sbjct 47760 GAGGTGGCTGTCTGCAAC 47743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720077059800