Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq87 104 2e-17 seq5 100 3e-16 seq244 96.9 3e-15 seq19 89.7 5e-13 >seq87 Length=177310 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | |||||| ||| |||||||| || |||| | Sbjct 65616 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAA 65557 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| || ||||| ||||| || || ||||| || ||||| ||| || || | ||| Sbjct 65556 GATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATT 65497 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | | ||||||| | ||||||||||| | || | || || || || || || || | Sbjct 65496 GT-CGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 65438 Query 138602 CAAAAATCTGCATG 138615 | || ||||||||| Sbjct 65437 CGAAGATCTGCATG 65424 >seq5 Length=467666 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | ||||| || || |||||||||||| Sbjct 48692 CCGCCACGGAGACGGAGGACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAA 48633 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| ||||| || |||| |||| |||||||||||||| || || Sbjct 48632 AGAGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGA 48573 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | ||||| | | |||||||| |||||||| Sbjct 48572 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT-CGATGGTGTCGGAAGACTCCAC 48514 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAA 138605 ||||| || | || ||||| || || || || || || Sbjct 48513 CTCGAGGGTGATAGTCTTACCCGTAAGGGTCTTCACGAA 48475 >seq244 Length=60485 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| ||||||||||||||||||| || || ||||| | || ||||| | Sbjct 26383 TTGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTTCGGCCATCCTCCAACTGCTTACCCG 26324 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| || || |||||||| || || || || || ||||| ||| || ||| | Sbjct 26323 CAAAGATAAGTCGTTGTTGGTCGGGCGGGATTCCCTCCTTGTCCTGGATCTTGGATTTGA 26264 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||| | ||||||||||| | || | ||| || || || || || | Sbjct 26263 CGTTGTCGATTGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTTGCCGGTGAGGGTCT 26204 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 26203 TCACGAAGATTTGCAT 26188 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| | ||| || |||||||||||| || || | | Sbjct 25860 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGTTGCTTTCCAGCGAA 25801 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 || | ||||||||||| ||||| ||||| || ||||| ||| || || | | Sbjct 25800 AATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGACGTT 25741 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||| || | || || ||||| | || | || || ||||| ||||| || || Sbjct 25740 GTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 25681 Query 138603 AAAAATCTGCAT 138614 || |||||||| Sbjct 25680 GAAGATCTGCAT 25669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | || ||||| || || ||||| |||||| Sbjct 26642 CCTCCACGGAGACGGAGAACCAAGTGGAGCGTGGATTCCTTCTGGATATTGTAATCGCTC 26583 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || ||||| | |||| ||||| || || |||||||| Sbjct 26582 AAGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGGAGGA 26523 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || | |||| | | |||||||| || || | Sbjct 26522 ATGCCTTCCTTGTCC-TGAATCTTGCTCTTCACGTTGT-CGATGGTGTCGGAAGATTCAA 26465 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || || || |||| || || |||||||||||||| Sbjct 26464 CTTCTAGGGTAATAGTCTTTCCCGTCAATGTCTTGACAAAAATCTGCAT 26416 >seq19 Length=350955 Score = 89.7 bits (98), Expect = 5e-13 Identities = 242/368 (66%), Gaps = 27/368 (7%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 |||||||| ||||| ||| |||||| | || ||||| || || || |||||||| ||| Sbjct 189790 ATGCCCGGTCTGACCTTCTCCAACGAACTCATCTCGCGTGATGAGGGTCTGCACACCGAC 189849 Query 52542 TTTGCGTGCCT---------CTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGAC 52592 || || ||||| | || ||| | ||| ||| || |||| Sbjct 189850 TTCGCCTGCCTGCTGTTCTCCCACCTCAACAACCGCC---CCGGCAA---------GGAC 189897 Query 52593 ACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCG 52652 | || || || ||| || || || | || || ||||||| | |||| || Sbjct 189898 GTGGTCGAGAAGATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGACGGAGGCT 189957 Query 52653 CTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTG 52712 ||||| | || || ||||||||||| | |||| ||||||||||||| || Sbjct 189958 CTGCCCTGTGCCCTACTAGGCATGAACGCCAACCTCATGAAGCAGTACATCGAGTTCGTC 190017 Query 52713 GCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCG--CAATCCG 52769 || || || ||| ||||| ||||| || | | ||| | | ||||| ||| || Sbjct 190018 GCCGACCGCCTGCTGGTGGCCCTCGG-CAACGAGAAGGTGTAC--CGCTCCACCAACCCC 190074 Query 52770 TTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTC 52829 || || || ||| | ||||| || || | |||||||||||||| ||||||||||| || Sbjct 190075 TTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTT 190134 Query 52830 GGCGAGTA 52837 || || || Sbjct 190135 GGTGATTA 190142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259267343600