Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq19 140 3e-28 seq244 129 6e-25 seq87 93.3 4e-14 seq5 82.4 7e-11 >seq19 Length=350955 Score = 140 bits (154), Expect = 3e-28 Identities = 347/527 (66%), Gaps = 21/527 (4%) Strand=Plus/Plus Query 47061 GAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAA 47120 |||| ||| || ||| | |||| |||||||| |||||| || | | |||| || | Sbjct 189628 GAGACCATTCCTTGCATCCGCAAGAAGGCCGACTGGGCCCTGCACTGGATTGCCGACAAG 189687 Query 47121 AACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCG 47180 || ||| | ||| ||||| | || || |||||| || ||||| |||||||| Sbjct 189688 AAGTCCACCTTCGCCCAACGTCTTATTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGT 189747 Query 47181 GGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTT 47240 || ||| || | || || | | || | || | |||||||| || || || Sbjct 189748 GGAGCCTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTC 189807 Query 47241 AGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT------- 47293 |||||| || |||||| | || || || ||||||||| |||| ||||| || Sbjct 189808 TCCAACGAACTCATCTCGCGTGATGAGGGTCTGCACACCGACTTCGCCTGCCTGCTGTTC 189867 Query 47294 --CTACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTT 47351 | || ||||| | || ||| ||||||| ||| | || | Sbjct 189868 TCCCACCTCAACAACCGCCCCGG-CAA-----GGACGTG------GTCGAGAAGATCATC 189915 Query 47352 GCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTG 47411 |||| |||||| |||||||| |||||| | | |||||||||||| | || | Sbjct 189916 ACCGATGCCGTCACCATTGAGCAGGAGTTCCTGACGGAGGCTCTGCCCTGTGCCCTACTA 189975 Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||||| | | |||| |||||||||| || ||||||||||||||||| || Sbjct 189976 GGCATGAACGCCAACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTGCTGGTG 190035 Query 47472 CAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATT 47531 || | ||| | |||| | || || || ||||| || ||| | ||||| Sbjct 190036 GCCCTCGGCAACGAGAAGGTGTACCGCTCCACCAACCCCTTCGACTTCATGGAGAACATC 190095 Query 47532 TCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || || | |||||||||||||| |||||||||||||| || || || Sbjct 190096 TCCCTGGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGATTA 190142 >seq244 Length=60485 Score = 129 bits (142), Expect = 6e-25 Identities = 172/235 (73%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| ||| || || | || | ||||| || | ||| || || || || |||||||| Sbjct 26648 TACTG-TCCTCCACGGAGACGGAGAACCAAGTGGAGCGTGGATTCCTTCTGGATATTGTA 26590 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 ||||| || |||||| ||| || ||||| || |||||| |||| | || |||||||| Sbjct 26589 ATCGCTCAAGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATC 26530 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 ||||| ||||| ||||||||| || || ||| | ||||| ||| |||||| | | Sbjct 26529 CGGAGGAATGCCTTCCTTGTCCTGAATCTTGCTCTTCACGTTGT-CGATGGTGTCGGAAG 26471 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| | ||| | || || || |||| || || |||||||||||||| Sbjct 26470 ATTCAACTTCTAGGGTAATAGTCTTTCCCGTCAATGTCTTGACAAAAATCTGCAT 26416 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| ||| | |||||| || || || || ||||||||| | Sbjct 25860 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGTTGCTTTCCAGCGAA 25801 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||||||||||| || |||||||| || |||||||||||| ||| ||| ||||| ||| Sbjct 25800 AATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGACGTT 25741 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| ||| |||| ||||| || | || | || ||||| || ||||| || | Sbjct 25740 G-TCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGA 25682 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 25681 CGAAGATCTGCAT 25669 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| |||| || ||| || ||| || | ||| || || Sbjct 26384 GTTGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTTCGGCCATCCTCCAACTGCTTACCC 26325 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||| || || ||||| || || |||||||||||| ||| || ||| Sbjct 26324 GCAAAGATAAGTCGTTGTTGGTCGGGCGGGATTCCCTCCTTGTCCTGGATCTTGGATTTG 26265 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| | ||| || || | || | ||| |||||||| || || Sbjct 26264 ACGTTG-TCGATTGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTTGCCGGTGAGGGT 26206 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 26205 CTTCACGAAGATTTGCAT 26188 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || ||||| ||||| ||| || || || ||| || ||||| || || Sbjct 26156 GTCGATTCCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCAAGCTGCTTGCCG 26097 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||||||||||||| || ||||| || ||||||||||| ||| ||| ||| Sbjct 26096 GCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGGATCTTCGACTTA 26037 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | ||| | || || ||||| || || Sbjct 26036 ACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTC 25977 Query 127097 TTTAC 127101 || || Sbjct 25976 TTGAC 25972 >seq87 Length=177310 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || || || ||| |||||| ||||||||| ||||| || || ||||||||| Sbjct 65579 TCTTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTG 65520 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||| || ||| || || | ||| | Sbjct 65519 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATA 65460 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || || || || || || ||||||||| Sbjct 65459 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 65424 >seq5 Length=467666 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| ||| | || || || || || || || || Sbjct 48662 GTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCAAGTTGCTTGCCG 48603 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||| || ||||| || ||||||||||||||| ||| || |||| Sbjct 48602 GCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 48543 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | | ||| || |||| ||| | || || || || || || Sbjct 48542 ACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTAAGGGTC 48483 Query 127097 TTTACAAA 127104 || || || Sbjct 48482 TTCACGAA 48475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497798401200