Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq244 138 3e-27
seq5 118 2e-21
seq87 107 5e-18
>seq244
Length=60485
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | |||||| || || ||||| |||| ||||| || ||| || | ||||||
Sbjct 26627 AGAACCAAGTGGAGCGTGGATTCCTTCTGGATATTGTAATCGCTCAAGGTGCGACCATCT 26568
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || |||||||||||||| ||||| |||||| ||| ||||| |||
Sbjct 26567 TCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCC 26508
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||||||| |||| |||||| | | ||| || || | || || |||
Sbjct 26507 TGAATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCAACTTCTAGGGTAATAGTC 26448
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| ||||| | || || |||||||| ||
Sbjct 26447 TTTCCCGTCAATGTCTTGACAAAAATCTG 26419
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|||||||| || |||||||| ||||| |||||||| || | ||||||||| || ||
Sbjct 26408 CGAAGTCTGAGAACAAGGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTT 26349
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| |||| |||||| || || ||||| || || || ||||| || |||||
Sbjct 26348 CGGCCATCCTCCAACTGCTTACCCGCAAAGATAAGTCGTTGTTGGTCGGGCGGGATTCCC 26289
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| || ||| |||| ||||| | | || || || |
Sbjct 26288 TCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATTGTGTCCGAAGACTCCACCTCAAGA 26229
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| || ||||| || ||||| || |||||
Sbjct 26228 GTGATCGTCTTGCCGGTGAGGGTCTTCACGAAGATTTG 26191
Score = 107 bits (118), Expect = 5e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||||||||| || |||||| || | ||||||||| | | ||| | || ||
Sbjct 25880 AGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCC 25821
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || |||||||| ||||| || | ||||| ||||| ||| ||| || || |||
Sbjct 25820 TCGAGTTGCTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 25761
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| ||| || | | ||| || || | ||||| |||
Sbjct 25760 TGGATCTTCGACTTGACGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTC 25701
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || |||||||| || || || || ||
Sbjct 25700 TTGCCAGTGAGAGTCTTGACGAAGATCTG 25672
Score = 104 bits (114), Expect = 6e-17
Identities = 143/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| |||||||| ||||| || | ||||||||| | || || | |||||
Sbjct 26171 AGGACGAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCC 26112
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| |||||||| || | ||||||||||| ||| ||| || || ||
Sbjct 26111 TCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCT 26052
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| |||||| | | || || || | ||||| |||
Sbjct 26051 TGGATCTTCGACTTAACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTC 25992
Query 199598 TTACCCGTGAGAGTTTTCAC 199617
|| || || || || || ||
Sbjct 25991 TTTCCGGTAAGGGTCTTGAC 25972
Score = 87.8 bits (96), Expect = 4e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993
||||||||| || || ||||||||||| ||||| | || || ||| |||||| | ||
Sbjct 26313 ACTTATCTTTGCGGGTAAGCAGTTGGAGGATGGCCGAACGCTGAGCGACTACAACATTCA 26372
Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
||| ||||| ||||| ||||||||| | ||||||||
Sbjct 26373 GAAGGAGTCAACTCTGCACCTTGTTCTCAGACTTCG 26408
>seq5
Length=467666
Score = 118 bits (130), Expect = 2e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| |||||||| || ||||| || |||| ||||||||| | | ||| | || ||
Sbjct 48677 AGGACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCC 48618
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||| ||||||||||| |||||||| ||||| || ||| || || |||
Sbjct 48617 TCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 48558
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| |||||| | | || || || | ||||| |||
Sbjct 48557 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 48498
Query 199598 TTACCCGTGAGAGTTTTCACAAA 199620
|||||||| || || ||||| ||
Sbjct 48497 TTACCCGTAAGGGTCTTCACGAA 48475
>seq87
Length=177310
Score = 107 bits (118), Expect = 5e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || || || || |||||| |||| ||||||||| | | ||| | || |||
Sbjct 65636 AGGACGAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCT 65577
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||| ||||||||||| || ||||||||||| || ||| || || |||
Sbjct 65576 TCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCC 65517
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| |||||| | | || || || | ||||| |||
Sbjct 65516 TGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTC 65457
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| || || || || || ||
Sbjct 65456 TTGCCCGTGAGGGTCTTGACGAAGATCTG 65428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178913972008835
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |