Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq87 156 5e-33
seq244 136 4e-27
seq5 118 1e-21
>seq87
Length=177310
Score = 156 bits (172), Expect = 5e-33
Identities = 160/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | || |||||||| ||||| ||||||||||| ||||| || |||| |||
Sbjct 65633 ACGAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCG 65574
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| |||||||||||||| |||| ||||||||||||| || | | |||||||||| |
Sbjct 65573 AGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGG 65514
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||||| | | | |||||||| || ||||| || | ||||| || |||
Sbjct 65513 ATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTG 65454
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| || || || || ||||| |||||
Sbjct 65453 CCCGTGAGGGTCTTGACGAAGATCTGCAT 65425
>seq244
Length=60485
Score = 136 bits (150), Expect = 4e-27
Identities = 153/202 (76%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456
|| |||||||| || || ||||||||||| |||||||| |||| ||||| ||||| ||
Sbjct 25865 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGTTGCTTTCCA 25806
Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516
||||| ||||| ||||| ||||||| || | | |||||||||| ||||||| ||||
Sbjct 25805 GCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 25746
Query 46517 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575
| ||| | | | || || ||||| || || | |||||||| ||||| || || ||
Sbjct 25745 A-CGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGT 25687
Query 46576 TTTAACAAAGATTTGCATTTTG 46597
|| || ||||| ||||| |||
Sbjct 25686 CTTGACGAAGATCTGCATCTTG 25665
Score = 102 bits (112), Expect = 9e-17
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| || || ||||||||||| || || || | || || |||||||||||||||||
Sbjct 26150 TCCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAA 26091
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| ||||||||||| | || | | ||||||||| ||||||| ||| | |
Sbjct 26090 ATCAATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGGATCTTCGACTTAACATTG 26031
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| ||| || || || | |||||||| || || || || || || ||
Sbjct 26030 TCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGAC 25972
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||||||| || || || | || || | |||||| || || ||
Sbjct 26379 CTCCTTCTGAATGTTGTAGTCGCTCAGCGTTCGGCCATCCTCCAACTGCTTACCCGCAAA 26320
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | || || ||||||| ||| | | |||||||||| |||||| |||| |||
Sbjct 26319 GATAAGTCGTTGTTGGTCGGGCGGGATTCCCTCCTTGTCCTGGATCTTGGATTTGA-CGT 26261
Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | ||||| || ||||| || | ||||| || ||||| || || || || |
Sbjct 26260 TGTCGATTGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTTGCCGGTGAGGGTCTTCA 26201
Query 46581 CAAAGATTTGCAT 46593
| |||||||||||
Sbjct 26200 CGAAGATTTGCAT 26188
Score = 82.4 bits (90), Expect = 9e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||||||||| ||| | ||||| | || || |||||||| || |||||
Sbjct 26606 TCCTTCTGGATATTGTAATCGCTCAAGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAG 26547
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | || ||||| || | || | || ||||||||| ||||| |||| | |||
Sbjct 26546 ATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGCTCTTCA-CGTT 26488
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | |||||| ||||| || || | || || || || ||||||| || || ||
Sbjct 26487 GTCGATGGTGTCGGAAGATTCAACTTCTAGGGTAATAGTCTTTCCCGTCAATGTCTTGAC 26428
Query 46582 AAAGATTTGCAT 46593
||| || |||||
Sbjct 26427 AAAAATCTGCAT 26416
>seq5
Length=467666
Score = 118 bits (130), Expect = 1e-21
Identities = 144/195 (74%), Gaps = 1/195 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || ||||| ||||||||||| ||||| || |||| || || ||||||||||||||
Sbjct 48657 CTCTTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAA 48598
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||| ||||||| || | || |||||||||| |||||| ||||| |
Sbjct 48597 GATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 48538
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| || ||||| || | ||||| || || ||||| || || || ||
Sbjct 48537 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTAAGGGTCTTCAC 48478
Query 46582 AAAGAT-TTGCATTT 46595
||| | ||| ||||
Sbjct 48477 GAAGCTATTGAATTT 48463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565234831932600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |