Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq19 286 3e-72
seq87 122 9e-23
seq244 109 5e-19
seq5 105 7e-18
>seq19
Length=350955
Score = 286 bits (316), Expect = 3e-72
Identities = 573/835 (69%), Gaps = 37/835 (4%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || ||| ||| ||| | ||| || || |||||||||
Sbjct 190127 TTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 190068
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
| | | ||| ||| | |||||| || | || ||||| | |||||| ||||||
Sbjct 190067 GTGGAGCGGTACACCTTCTCGTTGCCGA---GGGCCACCAGCAGGCGGTCGGCGACGAAC 190011
Query 132742 TCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGG-CAGCGCTT 132799
|||||||| ||| |||| | || || | | | || || || |||| || ||| || |
Sbjct 190010 TCGATGTACTGCTTCATGAGGTTGGCGTTCATG-CCTAGTAGG-GCACAGGGCAGAGCCT 189953
Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT-TTCCCTAACGCGC--- 132855
| || || || ||||| |||| ||| || ||||||| ||| ||| | | | ||
Sbjct 189952 CCGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATGATCTTCTCGACCACGTCCT 189893
Query 132856 -GCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAA 132914
|||| | ||| |||| | || ||||| || ||| || |||||| ||||
Sbjct 189892 TGCCGGGG-CGGTTGTTG----AGGTGGGAGAACAGCAGGCAGGCGAAGTCGGTGTGCAG 189838
Query 132915 GCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTT 132974
||||| || | || |||||||||||| ||| |||| ||||||||||| || || ||
Sbjct 189837 ACCCTCATCACGCGAGATGAGTTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 189778
Query 132975 TTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAA 133034
|||||||| || |||| ||||| || ||||||| ||||| || || |||||
Sbjct 189777 CTTGAGCCAGAAGATGGAAGCGAAGGCTCCACTGAAGAAGATACCCTCAACAGCGGCGAA 189718
Query 133035 AGCCACCAGGCGCTCGCCGAACGTGG-CTTCTTTGCTGGCGATCCAGCGCAGCGCCCATT 133093
|| | || || | | |||| |||| |||| ||| ||| |||||| |||| ||||| |
Sbjct 189717 GGCAATAAGACGTTGGGCGAAGGTGGACTTC-TTGTCGGCAATCCAGTGCAGGGCCCAGT 189659
Query 133094 CGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTT 133153
||||||| | || ||| || || || || ||||| || || | | | | ||||
Sbjct 189658 CGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCATTGAAGAGA-----TGTGTCTT 189604
Query 133154 CCGAGGAACGC------ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGT 133207
| | || | || | ||||||||| |||||| || || | || ||||| | ||
Sbjct 189603 CTG-GGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGGGAGTAAGTCTCGGAGTGGATGT 189545
Query 133208 TCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAG 133267
||||||| ||| || |||||||| ||||| || ||||| | ||| || || ||
Sbjct 189544 TCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCTGGGATCTGGACCTCGCCAG 189485
Query 133268 CGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCA 133327
||| |||||||| || || |||||||| |||||||| |||||||| ||||| || |
Sbjct 189484 AGAATCGCTCGACAAGGTTCTCGTTGACAATGCCGTCAGATGCGGCGAAGAAGGCGAGGA 189425
Query 133328 CGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCT 133384
||| |||||| ||||| ||||| | ||| | ||||||| | ||||
Sbjct 189424 TGTGGGAGATGAAGAATTTCTCGTCATCGTTTAGGCGGTTGCTCCAGTCGTGGAGATCCT 189365
Query 133385 TGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
|||| || || | ||||||| ||||||| || || || ||| || ||||||||
Sbjct 189364 TGGATAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCTTCGTGCTTCTTGTACAT 189310
>seq87
Length=177310
Score = 122 bits (134), Expect = 9e-23
Identities = 158/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||||||||| || |||||| | || || ||| | | |
Sbjct 65425 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTAGC 65484
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| |||||| |||||||
Sbjct 65485 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 65544
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| || || || |||| || || ||| ||||||||||
Sbjct 65545 CAGCGACTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACTCTCTCCGACTACAAC 65604
Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| ||| || || ||| | || || ||
Sbjct 65605 ATCCAGAAGGAGAGC-ACCCTTCATCTCGTCCTCCG 65639
>seq244
Length=60485
Score = 109 bits (120), Expect = 5e-19
Identities = 167/233 (72%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| ||
Sbjct 25666 AAGATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAATCC 25725
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| || | | | | |||| | || || |||| ||||| ||||| ||||| ||||
Sbjct 25726 TCGGATACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGA 25784
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||||||||| | |||| ||| || || || || || |||| ||||| || ||||||
Sbjct 25785 CCAACAGCGATTGATTTTCGCTGGAAAGCAACTCGAGGACGGTCGCACTCTTTCCGACTA 25844
Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| || ||||| ||| || || || | || || ||| || | || |||
Sbjct 25845 CAACATTCAGAAGGAGAGC-ACCCTCCACCTTGTCCTCCGTCTGCGTGGTGGC 25896
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310
|| |||| || || || || || || ||||||||| | || |||||| | |||||| |
Sbjct 25967 TAGTCGTCAAGACCCTTACCGGAAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCA 26026
Query 38311 TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370
| | | |||| || |||| ||||| ||||| ||||| | ||||| |||||
Sbjct 26027 TCGACAATGTTAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCTGACCAGCAGCGAT 26086
Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430
| |||| ||| ||||| ||||| || || | || ||||| |||||||||||| || |
Sbjct 26087 TGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTGTCCGACTACAACATTCAGA 26146
Query 38431 AGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| |||| || || | || || |||
Sbjct 26147 AGGAATCGACTCTTCACCTCGTCCTCCGT 26175
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| ||||| || ||||| | || || ||| | |
Sbjct 26188 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACGATCACTCTTGAGGTGGAGTCTTCG 26247
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | ||| || |||| ||||| |||||||| || |||||||
Sbjct 26248 GACACAATCGACAACG-TCAAATCCAAGATCCAGGACAAGGAGGGAATCCCGCCCGACCA 26306
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || || || | ||||| || ||| |||| || | || || || | |||||||||
Sbjct 26307 ACAACGACTTATCTTTGCGGGTAAGCAGTTGGAGGATGGCCGAACGCTGAGCGACTACAA 26366
Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446
||| || ||||| | || |||||
Sbjct 26367 CATTCAGAAGGAGTCAACTCTGCA 26390
>seq5
Length=467666
Score = 105 bits (116), Expect = 7e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || || |||||| |||| || ||| | |||||| | |
Sbjct 48475 TTCGTGAAGACCCTTACGGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCATC 48534
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| |||||| ||||||||||||| ||
Sbjct 48535 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAGCGTCTG 48594
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| || || || |||| || || || ||||||||||||||| ||
Sbjct 48595 ATCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACAACATCCAGAAA 48654
Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| | || || || | || || ||| | | |||||
Sbjct 48655 GAGTCCACCCTCCACCTCGTCCTCCGTCTCCGTGGCGG 48692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169642659200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |