Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq19 286 3e-72 seq87 122 9e-23 seq244 109 5e-19 seq5 105 7e-18 >seq19 Length=350955 Score = 286 bits (316), Expect = 3e-72 Identities = 573/835 (69%), Gaps = 37/835 (4%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || ||| ||| ||| | ||| || || ||||||||| Sbjct 190127 TTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 190068 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | | ||| ||| | |||||| || | || ||||| | |||||| |||||| Sbjct 190067 GTGGAGCGGTACACCTTCTCGTTGCCGA---GGGCCACCAGCAGGCGGTCGGCGACGAAC 190011 Query 132742 TCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGG-CAGCGCTT 132799 |||||||| ||| |||| | || || | | | || || || |||| || ||| || | Sbjct 190010 TCGATGTACTGCTTCATGAGGTTGGCGTTCATG-CCTAGTAGG-GCACAGGGCAGAGCCT 189953 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT-TTCCCTAACGCGC--- 132855 | || || || ||||| |||| ||| || ||||||| ||| ||| | | | || Sbjct 189952 CCGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATGATCTTCTCGACCACGTCCT 189893 Query 132856 -GCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAA 132914 |||| | ||| |||| | || ||||| || ||| || |||||| |||| Sbjct 189892 TGCCGGGG-CGGTTGTTG----AGGTGGGAGAACAGCAGGCAGGCGAAGTCGGTGTGCAG 189838 Query 132915 GCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTT 132974 ||||| || | || |||||||||||| ||| |||| ||||||||||| || || || Sbjct 189837 ACCCTCATCACGCGAGATGAGTTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 189778 Query 132975 TTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAA 133034 |||||||| || |||| ||||| || ||||||| ||||| || || ||||| Sbjct 189777 CTTGAGCCAGAAGATGGAAGCGAAGGCTCCACTGAAGAAGATACCCTCAACAGCGGCGAA 189718 Query 133035 AGCCACCAGGCGCTCGCCGAACGTGG-CTTCTTTGCTGGCGATCCAGCGCAGCGCCCATT 133093 || | || || | | |||| |||| |||| ||| ||| |||||| |||| ||||| | Sbjct 189717 GGCAATAAGACGTTGGGCGAAGGTGGACTTC-TTGTCGGCAATCCAGTGCAGGGCCCAGT 189659 Query 133094 CGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTT 133153 ||||||| | || ||| || || || || ||||| || || | | | | |||| Sbjct 189658 CGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCATTGAAGAGA-----TGTGTCTT 189604 Query 133154 CCGAGGAACGC------ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGT 133207 | | || | || | ||||||||| |||||| || || | || ||||| | || Sbjct 189603 CTG-GGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGGGAGTAAGTCTCGGAGTGGATGT 189545 Query 133208 TCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAG 133267 ||||||| ||| || |||||||| ||||| || ||||| | ||| || || || Sbjct 189544 TCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCTGGGATCTGGACCTCGCCAG 189485 Query 133268 CGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCA 133327 ||| |||||||| || || |||||||| |||||||| |||||||| ||||| || | Sbjct 189484 AGAATCGCTCGACAAGGTTCTCGTTGACAATGCCGTCAGATGCGGCGAAGAAGGCGAGGA 189425 Query 133328 CGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCT 133384 ||| |||||| ||||| ||||| | ||| | ||||||| | |||| Sbjct 189424 TGTGGGAGATGAAGAATTTCTCGTCATCGTTTAGGCGGTTGCTCCAGTCGTGGAGATCCT 189365 Query 133385 TGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 |||| || || | ||||||| ||||||| || || || ||| || |||||||| Sbjct 189364 TGGATAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCTTCGTGCTTCTTGTACAT 189310 >seq87 Length=177310 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || || ||| | | | Sbjct 65425 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTAGC 65484 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| |||||| ||||||| Sbjct 65485 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 65544 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| || || || |||| || || ||| |||||||||| Sbjct 65545 CAGCGACTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACTCTCTCCGACTACAAC 65604 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| ||| || || ||| | || || || Sbjct 65605 ATCCAGAAGGAGAGC-ACCCTTCATCTCGTCCTCCG 65639 >seq244 Length=60485 Score = 109 bits (120), Expect = 5e-19 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| || Sbjct 25666 AAGATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAATCC 25725 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | | |||| | || || |||| ||||| ||||| ||||| |||| Sbjct 25726 TCGGATACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGA 25784 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| | |||| ||| || || || || || |||| ||||| || |||||| Sbjct 25785 CCAACAGCGATTGATTTTCGCTGGAAAGCAACTCGAGGACGGTCGCACTCTTTCCGACTA 25844 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || ||||| ||| || || || | || || ||| || | || ||| Sbjct 25845 CAACATTCAGAAGGAGAGC-ACCCTCCACCTTGTCCTCCGTCTGCGTGGTGGC 25896 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310 || |||| || || || || || || ||||||||| | || |||||| | |||||| | Sbjct 25967 TAGTCGTCAAGACCCTTACCGGAAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACCA 26026 Query 38311 TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | | | |||| || |||| ||||| ||||| ||||| | ||||| ||||| Sbjct 26027 TCGACAATGTTAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCTGACCAGCAGCGAT 26086 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | |||| ||| ||||| ||||| || || | || ||||| |||||||||||| || | Sbjct 26087 TGATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTGTCCGACTACAACATTCAGA 26146 Query 38431 AGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||| || || | || || ||| Sbjct 26147 AGGAATCGACTCTTCACCTCGTCCTCCGT 26175 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| || ||||| | || || ||| | | Sbjct 26188 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACGATCACTCTTGAGGTGGAGTCTTCG 26247 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | ||| || |||| ||||| |||||||| || ||||||| Sbjct 26248 GACACAATCGACAACG-TCAAATCCAAGATCCAGGACAAGGAGGGAATCCCGCCCGACCA 26306 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | ||||| || ||| |||| || | || || || | ||||||||| Sbjct 26307 ACAACGACTTATCTTTGCGGGTAAGCAGTTGGAGGATGGCCGAACGCTGAGCGACTACAA 26366 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 ||| || ||||| | || ||||| Sbjct 26367 CATTCAGAAGGAGTCAACTCTGCA 26390 >seq5 Length=467666 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || || |||||| |||| || ||| | |||||| | | Sbjct 48475 TTCGTGAAGACCCTTACGGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCATC 48534 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| ||||||||||||| || Sbjct 48535 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAGCGTCTG 48594 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| || || || |||| || || || ||||||||||||||| || Sbjct 48595 ATCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACAACATCCAGAAA 48654 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || || || | || || ||| | | ||||| Sbjct 48655 GAGTCCACCCTCCACCTCGTCCTCCGTCTCCGTGGCGG 48692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169642659200