Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 >seq3 Length=506345 Score = 116 bits (128), Expect = 4e-21 Identities = 196/284 (69%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 158407 GGTGAGTGGGGATTTGACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 158466 || || ||||| ||||||||| | || ||| |||||| |||||| | || |||||| Sbjct 416735 GGAGAATGGGGTGCTGACATTGCGTTCGGAAGTGCGCAAAGATTTGGTGTGCCGATGGGA 416794 Query 158467 TACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 158526 | ||| || || ||||| || || || || || ||| | ||||| ||||| || Sbjct 416795 TTCGGGGGACCACATGCCGCCTTTTTCGCCGTCCAGGAGAAGCACAAGAGGAAGATGCCC 416854 Query 158527 GGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTA 158586 || || | || || ||| ||| | |||| |||||| ||| || |||| ||| Sbjct 416855 GGACGATTGGTTGGCTTGTCTAAGGATCGACTAGGTGGTAAAGCGTACCGACTAGCTCTA 416914 Query 158587 CAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAA 158646 ||||| || || || || || | ||||| ||||||||||| ||| |||| || | ||| Sbjct 416915 CAGACAAGGGAACAACACATTCGCAGAGAGAAAGCAACCAGCAACGTCTGTACTTCGCAA 416974 Query 158647 GCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGG 158690 || || |||| || ||| | |||||||| || ||||| Sbjct 416975 GCGTTGTTGGCGAACATGAACGCCCTCTATGCAATCTACCATGG 417018 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 157885 GGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAGAAT 157944 || ||||||||||| |||||| ||| || | ||||| || ||||| || || ||||| Sbjct 416183 GGCCAAGGATACTACGGAACCCACACTCCAGCCGTCATCCAACGAAATGTACTCGAGAAC 416242 Query 157945 CCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAA 158004 || |||||||| ||||| || || ||| | || || ||| || | |||||| Sbjct 416243 CCGGCATGGTACACGAGCTACACCCCTTACCAACCAGAAATCAGTCAAGGCCGCTTGGAA 416302 Query 158005 GCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCA 158064 | || |||| | ||| || | | ||||| || || | || || ||||| || || Sbjct 416303 TCCTTGCTCAACTTCCAGACTATGGTTACAGACCTTACCGCGCTTCCCATAGCCAATGCC 416362 Query 158065 TCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 ||| ||||||||| ||||| || || || || ||| Sbjct 416363 AGTCTTCTAGATGAAGGCACTGCTGCTGCCGAGGCCATG 416401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588047487926800