Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq244 96.9 2e-15 seq87 93.3 3e-14 >seq244 Length=60485 Score = 96.9 bits (106), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 18/209 (9%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||||||||| ||||| ||||| | || | || || || || ||||| Sbjct 25865 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGTTGCTTTCCA 25806 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || | ||| || ||||| | || | ||||||||||| |||||| ||| Sbjct 25805 GCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 25746 Query 34905 ACG-----GATGCTATC----GATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCC 34955 ||| |||| |||| |||| || |||||| | || ||||| || || Sbjct 25745 ACGTTGTCGATGGTATCCGAGGATT---CGACCTCAAGA------GTGATGGTCTTGCCA 25695 Query 34956 GTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||||||||| || ||||||||||| || Sbjct 25694 GTGAGAGTCTTGACGAAGATCTGCATCTT 25666 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || |||| |||| |||| ||| || || ||||| Sbjct 26378 TCCTTCTGAATGTTGTAGTCGCTCAGCGTTCGGCCATCCTCCAACTGCTTACCCGCAAAG 26319 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||||||| ||||| |||| | ||||||||||| ||||| |||||| Sbjct 26318 ATAAGTCGTTGTTGGTCGGGCGGGATTCCCTCCTTGTCCTGGATCTTGGATTTGAC---- 26263 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || || | || || || || || ||||| ||||| Sbjct 26262 GTTGTCGATTGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTTGCCGGTGAGGGTCTT 26203 Query 34967 CACAAAGATCTGCATA 34982 ||| ||||| |||||| Sbjct 26202 CACGAAGATTTGCATA 26187 Score = 82.4 bits (90), Expect = 5e-11 Identities = 130/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| || ||| |||| |||| || ||||| || ||||| || Sbjct 26151 TTCCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAA 26092 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||| |||||||| | || | ||||||||||| |||||| || || | Sbjct 26091 AATCAATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGGATCTTCGACTTAAC--A 26034 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| || | ||| || || | ||| ||||| ||||| || || |||| Sbjct 26033 T--TGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCT 25976 Query 34966 TCAC 34969 | || Sbjct 25975 TGAC 25972 >seq87 Length=177310 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||||| || ||||| ||||| ||||| || || | || | || || || || Sbjct 65627 TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTGC 65568 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || ||||| || || ||||| |||||||| | || | ||||||||||| ||||| Sbjct 65567 TTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTG 65508 Query 34899 TGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCC 34954 ||||| || | ||||| || | | ||| || || | ||| || || || || Sbjct 65507 GACTTGAC--AT--TGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCC 65452 Query 34955 CGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||| ||||| || ||||||||||| Sbjct 65451 CGTGAGGGTCTTGACGAAGATCTGCAT 65425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631601981640