Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq244 96.9 2e-15
seq87 93.3 3e-14
>seq244
Length=60485
Score = 96.9 bits (106), Expect = 2e-15
Identities = 147/209 (70%), Gaps = 18/209 (9%)
Strand=Plus/Minus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
||||| || ||||||||||| ||||| ||||| | || | || || || || |||||
Sbjct 25865 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGTTGCTTTCCA 25806
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
|| || || | ||| || ||||| | || | ||||||||||| |||||| |||
Sbjct 25805 GCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 25746
Query 34905 ACG-----GATGCTATC----GATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCC 34955
||| |||| |||| |||| || |||||| | || ||||| || ||
Sbjct 25745 ACGTTGTCGATGGTATCCGAGGATT---CGACCTCAAGA------GTGATGGTCTTGCCA 25695
Query 34956 GTGAGAGTCTTCACAAAGATCTGCATATT 34984
||||||||||| || ||||||||||| ||
Sbjct 25694 GTGAGAGTCTTGACGAAGATCTGCATCTT 25666
Score = 95.1 bits (104), Expect = 8e-15
Identities = 140/196 (71%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| ||||| || |||| |||| |||| ||| || || |||||
Sbjct 26378 TCCTTCTGAATGTTGTAGTCGCTCAGCGTTCGGCCATCCTCCAACTGCTTACCCGCAAAG 26319
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| |||||||| ||||| |||| | ||||||||||| ||||| ||||||
Sbjct 26318 ATAAGTCGTTGTTGGTCGGGCGGGATTCCCTCCTTGTCCTGGATCTTGGATTTGAC---- 26263
Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| | ||||| | ||| | ||| || || | || || || || || ||||| |||||
Sbjct 26262 GTTGTCGATTGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTTGCCGGTGAGGGTCTT 26203
Query 34967 CACAAAGATCTGCATA 34982
||| ||||| ||||||
Sbjct 26202 CACGAAGATTTGCATA 26187
Score = 82.4 bits (90), Expect = 5e-11
Identities = 130/184 (71%), Gaps = 8/184 (4%)
Strand=Plus/Minus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||||||||| ||||| || ||| |||| |||| || ||||| || ||||| ||
Sbjct 26151 TTCCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAA 26092
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | ||| |||||||| | || | ||||||||||| |||||| || || |
Sbjct 26091 AATCAATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGGATCTTCGACTTAAC--A 26034
Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965
| | ||||| || | ||| || || | ||| ||||| ||||| || || ||||
Sbjct 26033 T--TGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCT 25976
Query 34966 TCAC 34969
| ||
Sbjct 25975 TGAC 25972
>seq87
Length=177310
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/207 (71%), Gaps = 8/207 (4%)
Strand=Plus/Minus
Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838
|||| ||||| || ||||| ||||| ||||| || || | || | || || || ||
Sbjct 65627 TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTGC 65568
Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898
|| ||||| || || ||||| |||||||| | || | ||||||||||| |||||
Sbjct 65567 TTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTG 65508
Query 34899 TGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCC 34954
||||| || | ||||| || | | ||| || || | ||| || || || ||
Sbjct 65507 GACTTGAC--AT--TGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCC 65452
Query 34955 CGTGAGAGTCTTCACAAAGATCTGCAT 34981
|||||| ||||| || |||||||||||
Sbjct 65451 CGTGAGGGTCTTGACGAAGATCTGCAT 65425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324631601981640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |