Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq122 109 6e-19 >seq122 Length=136518 Score = 109 bits (120), Expect = 6e-19 Identities = 287/438 (66%), Gaps = 0/438 (0%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| || ||||| ||||| || | | ||| ||||| || || ||||||||||| | | Sbjct 47974 CTCGAACTCATCGCCATAAACGTCAGCTAGACCAGGGCACTCGTTAGGACACATGAGGGT 48033 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| || ||| || | || | |||| || | ||| || ||||| ||||| | || Sbjct 48034 CCACTCTCCATTCTTCTCAACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCCAGGAA 48093 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | ||| | | | | ||| || |||||| ||| || ||| ||||| || || | Sbjct 48094 GAGATCGCGGGCACGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCGAA 48153 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | ||| | ||||| || || | || || || | |||| |||| || || || || Sbjct 48154 AACATCCGAGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACC 48213 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 ||||||| ||||| ||||| || || | || | || ||| || ||||| || || || Sbjct 48214 CTGATCTACGTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGA 48273 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 | || || || || | ||| || ||| |||| | || || | ||| Sbjct 48274 GGTGCCGTTAGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGAGACC 48333 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 |||||||| ||||| || || || | ||||| || ||||| || || || || || Sbjct 48334 AATACCACCGGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCCTC 48393 Query 48545 TATACTATCATCTATCAT 48562 || ||||| || |||| Sbjct 48394 AATGCTATCGTCCTTCAT 48411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105251688200