Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 seq5 86.0 5e-12 seq87 84.2 2e-11 seq244 82.4 6e-11 >seq1 Length=578297 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183 || || || ||||| || |||||||||| ||| ||| |||| || ||| | ||| Sbjct 355766 AACTCCGTCTCGGAGTGGTTGAACAGCAGCACCTTGACGGGGCCCCGATAGTCCGCGTCG 355707 Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243 || || || || ||| |||||||||||||||| ||| || || ||||||||||| | Sbjct 355706 ATGACGCCGGCGCCCGTGTCGATGAAGTGCTTGGACGCGAGGCCGGAGCGGGGCGCTACG 355647 Query 9244 CGACCGTAGCATCCCACCGGTA 9265 || |||||| ||| |||||| Sbjct 355646 CGCCCGTAGGTGCCCGCCGGTA 355625 >seq5 Length=467666 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| || || ||||| || || ||| |||| |||| || | ||| Sbjct 48668 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCAAGTTGC 48609 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || ||||| || ||||| |||||||| || | ||||| |||||||||||| Sbjct 48608 TTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTC 48559 >seq87 Length=177310 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || |||||||| || || || ||||| || || ||| | || |||| || | || Sbjct 65628 ATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTG 65569 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| ||||| || ||||||||||| || || | ||||| ||||||||||| ||||| Sbjct 65568 CTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTT 65509 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || | ||||||||| | || || || || ||||| Sbjct 65508 GGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGT 65449 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 65448 GAGGGTCTTGACGAAGATCTGCAT 65425 >seq244 Length=60485 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || ||||| ||||| || || ||| | ||| |||| || | ||| Sbjct 25871 TGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGTTGC 25812 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || |||| ||||||||| || | |||| ||||||||||| ||||| Sbjct 25811 TTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTC 25752 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || || | || ||||| | || || || || || || Sbjct 25751 GACTTGACGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGTG 25692 Query 48744 AAAGTTTTTACAAAAATCTGCATCGTGT 48771 | ||| || || || ||||||||| ||| Sbjct 25691 AGAGTCTTGACGAAGATCTGCATCTTGT 25664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935255448115