Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq1 89.7 4e-13
seq5 86.0 5e-12
seq87 84.2 2e-11
seq244 82.4 6e-11
>seq1
Length=578297
Score = 89.7 bits (98), Expect = 4e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183
|| || || ||||| || |||||||||| ||| ||| |||| || ||| | |||
Sbjct 355766 AACTCCGTCTCGGAGTGGTTGAACAGCAGCACCTTGACGGGGCCCCGATAGTCCGCGTCG 355707
Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243
|| || || || ||| |||||||||||||||| ||| || || ||||||||||| |
Sbjct 355706 ATGACGCCGGCGCCCGTGTCGATGAAGTGCTTGGACGCGAGGCCGGAGCGGGGCGCTACG 355647
Query 9244 CGACCGTAGCATCCCACCGGTA 9265
|| |||||| ||| ||||||
Sbjct 355646 CGCCCGTAGGTGCCCGCCGGTA 355625
>seq5
Length=467666
Score = 86.0 bits (94), Expect = 5e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| |||||| || || ||||| || || ||| |||| |||| || | |||
Sbjct 48668 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCAAGTTGC 48609
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|| ||||| || ||||| |||||||| || | ||||| ||||||||||||
Sbjct 48608 TTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTC 48559
>seq87
Length=177310
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622
||| || |||||||| || || || ||||| || || ||| | || |||| || | ||
Sbjct 65628 ATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTG 65569
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
||| ||||| || ||||||||||| || || | ||||| ||||||||||| |||||
Sbjct 65568 CTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTT 65509
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
|| ||| | | | || | ||||||||| | || || || || |||||
Sbjct 65508 GGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGT 65449
Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766
| || || || || ||||||||
Sbjct 65448 GAGGGTCTTGACGAAGATCTGCAT 65425
>seq244
Length=60485
Score = 82.4 bits (90), Expect = 6e-11
Identities = 143/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || |||||||| || ||||| ||||| || || ||| | ||| |||| || | |||
Sbjct 25871 TGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGTTGC 25812
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| || || || |||| ||||||||| || | |||| ||||||||||| |||||
Sbjct 25811 TTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTC 25752
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| || | | | || || | || ||||| | || || || || || ||
Sbjct 25751 GACTTGACGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGTG 25692
Query 48744 AAAGTTTTTACAAAAATCTGCATCGTGT 48771
| ||| || || || ||||||||| |||
Sbjct 25691 AGAGTCTTGACGAAGATCTGCATCTTGT 25664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380935255448115
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |