Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq122 105 2e-17
seq97 105 2e-17
seq53 87.8 5e-12
>seq122
Length=136518
Score = 105 bits (116), Expect = 2e-17
Identities = 348/536 (65%), Gaps = 9/536 (2%)
Strand=Plus/Plus
Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029
||||| | ||| || ||||| || || || | ||| || || ||| | || |||
Sbjct 48113 TCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCGAAAACATCCGAGTGCCAAGGC 48172
Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086
|| || || || || ||| |||| |||||| |||||||||||||| || | |||
Sbjct 48173 TCGAGGTAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACCCTGATCTACGTATCTTGCA 48232
Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146
|| ||||||||||||| |||||| || | ||| || || || ||||| || || || |
Sbjct 48233 GTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTTAGTGCCAGCA 48292
Query 156147 ATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TT 156205
|| | || |||| | || | || || | || ||||||||||| | |||| ||
Sbjct 48293 ATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGAGACCAATACCACC-GGCCATCTT 48351
Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265
|| || || || ||| | || | | | ||||| ||||| ||| || | |||
Sbjct 48352 GGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCCTCAATGCTATCGTCCTTCAT 48411
Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325
| || |||| || | || | | ||||| ||||| ||||| || || ||
Sbjct 48412 GTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTCCCAGCATTGAAGAGAGTTGG 48471
Query 156326 TGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAG 156385
| |||||| | || || || ||||||| | ||| |||| | | ||||||||
Sbjct 48472 GGAAGCATGAGTGAAGTATTTGCTAGACATGAGGTTGTAGGTCTGAATGACCTTCTCAAC 48531
Query 156386 AT--TAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACA 156443
|| | | ||| || | || || || | ||| ||||||||| || | ||| ||
Sbjct 48532 ATCGTCGCCCC--AGATGCCGACAGCCACACGCATGATCATATGCTGTGGTCTCTCCACG 48589
Query 156444 ATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
||| | |||| || ||||| | || |||| ||| || || ||||| ||
Sbjct 48590 ATCTTGTCGTCAAGCTTAAGTAGGTAAGATCGCTCCAAAGTCTTGAAGCCGAAGTA 48645
>seq97
Length=162186
Score = 105 bits (116), Expect = 2e-17
Identities = 382/591 (65%), Gaps = 20/591 (3%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
||||||||||| | | ||| | || || || | ||||| || | || | || ||
Sbjct 148332 ATAAGACCACAGATTTCACAGATGTGAACCCTAAATGCATCCGAGACCTCGAAGAGACGT 148273
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
||||| ||| | |||||||| | |||||| || ||||| |||||||| |||||
Sbjct 148272 TCCTTGAGGAAAGAGGCCGCACCGTGAGCAATCATGCAGTCACGTTCCATTTCTCCGAAT 148213
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586
|| ||||| ||||| | ||| | |||||| |||||||||| || | | || |||
Sbjct 148212 CGGAGACCTCCATCCCTAGCACGACCCTCAACAGGCTGACGCGTCATGATCTGCACTGGA 148153
Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646
|| | | |||| ||| |||| ||||||||| | |||||||||||| | |
Sbjct 148152 CCACGCGCTCTTGCATGTATCTTGTCATCCACCATATGCCTTAGACGCTGGTAGTAAGTA 148093
Query 251647 GGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAAC 251702
|| |||| ||| | ||||||||| |||| ||||| || ||| |||||||
Sbjct 148092 GGTCCGAAGAACACCTGTGCTCGAAG---CTTGC-GACCAGTGTGACCGTGGTACATAAT 148037
Query 251703 TTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAG---CAATATC--ACCA 251757
|| ||| ||||| || ||| | | | | |||| | ||| | | |
Sbjct 148036 CTCAAACCCACGAGATTGGTATCCATG-----CTCACGCAGAAGGTTCGATACCGAATCG 147982
Query 251758 ATCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTG 251817
| | ||| | | | || || |||| || | | ||| || | | | ||||||
Sbjct 147981 ACCGTGACATCGGTGAAGGGCGTAGCGTCACCTTCCATTCCCTTTAGGGTTGAGACTTTG 147922
Query 251818 CCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTG 251877
| | || ||| ||| || || ||||||||||| ||||| || || || |||
Sbjct 147921 CTCAGTAGACACTCGATCAAGTGAGCAATAGTCATACGGGAAGGAATGGCGTGTGGGTTG 147862
Query 251878 ATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-T 251936
||||| | ||||| | || || |||||| ||||| | ||| | | ||| |
Sbjct 147861 ATGATTAAATCGGGAACGATGCCCTCGCGAGTGAAAGGCATGT-CTTCTTGGCGGTAAGT 147803
Query 251937 GTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
| ||||| ||||| || || |||||||||||| ||||| || || ||
Sbjct 147802 GACACCAATGGTTCCTTTCTGACCGTGACGAGAAGCAAACTTGTCTCCGAT 147752
>seq53
Length=226803
Score = 87.8 bits (96), Expect = 5e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075
|||||| |||| || ||||||||||| | |||||||||||| ||||| || | ||| |
Sbjct 101487 GCGAGACCACCGAGAGAGTCACGGTCCAAGAAATTAGTAGGCTCGTCGAGCACAAGCAAA 101546
Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGA 354131
||||| | ||||||| || | || | ||| ||||| |||||||| || || ||
Sbjct 101547 TGCGGGTTGTTCCACATCGCACCCGCAATAACGACCTTGACCTTCTGGCCTCCCGA 101602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471808076880185
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |