Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq122 105 2e-17 seq97 105 2e-17 seq53 87.8 5e-12 >seq122 Length=136518 Score = 105 bits (116), Expect = 2e-17 Identities = 348/536 (65%), Gaps = 9/536 (2%) Strand=Plus/Plus Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 ||||| | ||| || ||||| || || || | ||| || || ||| | || ||| Sbjct 48113 TCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCGAAAACATCCGAGTGCCAAGGC 48172 Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086 || || || || || ||| |||| |||||| |||||||||||||| || | ||| Sbjct 48173 TCGAGGTAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACCCTGATCTACGTATCTTGCA 48232 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146 || ||||||||||||| |||||| || | ||| || || || ||||| || || || | Sbjct 48233 GTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTTAGTGCCAGCA 48292 Query 156147 ATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TT 156205 || | || |||| | || | || || | || ||||||||||| | |||| || Sbjct 48293 ATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGAGACCAATACCACC-GGCCATCTT 48351 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || || || || ||| | || | | | ||||| ||||| ||| || | ||| Sbjct 48352 GGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCCTCAATGCTATCGTCCTTCAT 48411 Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 | || |||| || | || | | ||||| ||||| ||||| || || || Sbjct 48412 GTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTCCCAGCATTGAAGAGAGTTGG 48471 Query 156326 TGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAG 156385 | |||||| | || || || ||||||| | ||| |||| | | |||||||| Sbjct 48472 GGAAGCATGAGTGAAGTATTTGCTAGACATGAGGTTGTAGGTCTGAATGACCTTCTCAAC 48531 Query 156386 AT--TAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACA 156443 || | | ||| || | || || || | ||| ||||||||| || | ||| || Sbjct 48532 ATCGTCGCCCC--AGATGCCGACAGCCACACGCATGATCATATGCTGTGGTCTCTCCACG 48589 Query 156444 ATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 ||| | |||| || ||||| | || |||| ||| || || ||||| || Sbjct 48590 ATCTTGTCGTCAAGCTTAAGTAGGTAAGATCGCTCCAAAGTCTTGAAGCCGAAGTA 48645 >seq97 Length=162186 Score = 105 bits (116), Expect = 2e-17 Identities = 382/591 (65%), Gaps = 20/591 (3%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 ||||||||||| | | ||| | || || || | ||||| || | || | || || Sbjct 148332 ATAAGACCACAGATTTCACAGATGTGAACCCTAAATGCATCCGAGACCTCGAAGAGACGT 148273 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 ||||| ||| | |||||||| | |||||| || ||||| |||||||| ||||| Sbjct 148272 TCCTTGAGGAAAGAGGCCGCACCGTGAGCAATCATGCAGTCACGTTCCATTTCTCCGAAT 148213 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||| ||||| | ||| | |||||| |||||||||| || | | || ||| Sbjct 148212 CGGAGACCTCCATCCCTAGCACGACCCTCAACAGGCTGACGCGTCATGATCTGCACTGGA 148153 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || | | |||| ||| |||| ||||||||| | |||||||||||| | | Sbjct 148152 CCACGCGCTCTTGCATGTATCTTGTCATCCACCATATGCCTTAGACGCTGGTAGTAAGTA 148093 Query 251647 GGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAAC 251702 || |||| ||| | ||||||||| |||| ||||| || ||| ||||||| Sbjct 148092 GGTCCGAAGAACACCTGTGCTCGAAG---CTTGC-GACCAGTGTGACCGTGGTACATAAT 148037 Query 251703 TTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAG---CAATATC--ACCA 251757 || ||| ||||| || ||| | | | | |||| | ||| | | | Sbjct 148036 CTCAAACCCACGAGATTGGTATCCATG-----CTCACGCAGAAGGTTCGATACCGAATCG 147982 Query 251758 ATCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTG 251817 | | ||| | | | || || |||| || | | ||| || | | | |||||| Sbjct 147981 ACCGTGACATCGGTGAAGGGCGTAGCGTCACCTTCCATTCCCTTTAGGGTTGAGACTTTG 147922 Query 251818 CCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTG 251877 | | || ||| ||| || || ||||||||||| ||||| || || || ||| Sbjct 147921 CTCAGTAGACACTCGATCAAGTGAGCAATAGTCATACGGGAAGGAATGGCGTGTGGGTTG 147862 Query 251878 ATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-T 251936 ||||| | ||||| | || || |||||| ||||| | ||| | | ||| | Sbjct 147861 ATGATTAAATCGGGAACGATGCCCTCGCGAGTGAAAGGCATGT-CTTCTTGGCGGTAAGT 147803 Query 251937 GTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | ||||| ||||| || || |||||||||||| ||||| || || || Sbjct 147802 GACACCAATGGTTCCTTTCTGACCGTGACGAGAAGCAAACTTGTCTCCGAT 147752 >seq53 Length=226803 Score = 87.8 bits (96), Expect = 5e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 |||||| |||| || ||||||||||| | |||||||||||| ||||| || | ||| | Sbjct 101487 GCGAGACCACCGAGAGAGTCACGGTCCAAGAAATTAGTAGGCTCGTCGAGCACAAGCAAA 101546 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGA 354131 ||||| | ||||||| || | || | ||| ||||| |||||||| || || || Sbjct 101547 TGCGGGTTGTTCCACATCGCACCCGCAATAACGACCTTGACCTTCTGGCCTCCCGA 101602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471808076880185