Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq19 154 2e-31 seq52 129 7e-24 seq99 111 2e-18 seq122 109 7e-18 >seq19 Length=350955 Score = 154 bits (170), Expect = 2e-31 Identities = 230/322 (71%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || |||||| |||||| |||||||||||||| | || ||||| Sbjct 190151 GCCTTCTGGTAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATG 190092 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||| ||| ||| ||||| | | | Sbjct 190091 TTCTCCATGAAGTCGAAGGGGTTGGTGGAGCGGTACACCTTCTCGTTGCCGAGGGCCACC 190032 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||||||||| |||||||||||||| ||||||| |||||||||||| | Sbjct 190031 AGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCATGCCTAGT 189972 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | ||| ||| ||||| | ||| || |||||| ||| |||| Sbjct 189971 AGGGCACAGGGCAGAGCCTCCGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATG 189912 Query 868931 ATCTGCCTGGGCACGTC--GGCCGAGG-GCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 |||| | | |||||| |||| || | ||||||| | | | | | ||||||||| Sbjct 189911 ATCTTCTCGACCACGTCCTTGCCGGGGCGGTTGTTGAGGTG---GGAGAACAGCAGGCAG 189855 Query 868988 GCAAAGTCGCAGTGCA-ACCCT 869008 || |||||| ||||| ||||| Sbjct 189854 GCGAAGTCGGTGTGCAGACCCT 189833 Score = 123 bits (136), Expect = 3e-22 Identities = 197/280 (70%), Gaps = 11/280 (4%) Strand=Plus/Minus Query 869187 CGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCC 869246 ||||| ||| | ||||||| |||| || ||||||||||| || ||||||||||||| Sbjct 189827 CGCGA--GATGAGTTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCC 189770 Query 869247 AAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGA 869306 | ||||||| ||| || ||| ||||| ||||| || ||||| ||| | || | Sbjct 189769 AGAAGATGGAAGCGAAGGCTCCACTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAA 189710 Query 869307 GCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGCCCAGTCGG 869363 | || | ||| |||||| || || ||||| | ||||| | || |||||||||| Sbjct 189709 GACGTTGGGCGAAGGTG--GA----CTTCTTGTCGGCAATCCAGTGCAGGGCCCAGTCGG 189656 Query 869364 CCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCG 869423 |||| || | | | || | || || ||||| ||||| || ||| | ||| | Sbjct 189655 CCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCATTGAAGAGATGTGTCTTCTGGGCAG 189596 Query 869424 GGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||||||| |||||||| || ||||| || || ||||| Sbjct 189595 GCTCCTTGATGTAGGTGTCAATGAGGAGGGAGTAAGTCTC 189556 >seq52 Length=227583 Score = 129 bits (142), Expect = 7e-24 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||| |||||||||||| |||| | ||| |||| |||||| |||| |||||||||| Sbjct 91699 CCAACTATCTCGACATCAAGGCTCTCTTGGATGTTGGTTGCAAGACTGTTGCCAACATGA 91758 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||| |||||||||||||| ||||| || ||||| | | ||| Sbjct 91759 TCAAGGGCAAGTCTCCCGAGGAGATCCGTAAGACGTTCAACATTACGAACG 91809 >seq99 Length=160603 Score = 111 bits (122), Expect = 2e-18 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 1574058 CTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCG 1574117 || |||||||| ||||||||| | | ||||||||||| |||||| || | || |||| Sbjct 133274 CTTCCGCCCGGCCGCCACAAGATTGTGATCCTCGACGAAGCCGACAGCATGACCTCGGGA 133333 Query 1574118 GCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTG 1574177 |||||||| || || ||| || ||||| | || |||| ||||||||||| ||| | Sbjct 133334 GCCCAGCAAGCGCTACGGCGTACGATGGAGATCTACTCCAATACGACGCGCTTCGCCTTC 133393 Query 1574178 GCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 || || ||| |||| | | | ||||| |||| ||| || ||||||||||| || Sbjct 133394 GCATGTAACCAGTCGAACAAGATTATCGAACCCCTGCAATCCCGATGCGCCATTCTACG 133452 >seq122 Length=136518 Score = 109 bits (120), Expect = 7e-18 Identities = 179/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| || ||||| | || |||| || ||||| || |||||||| || | |||||| || Sbjct 48214 CTGATCTACGTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGA 48273 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||| ||||| || | ||| | ||| | || || | ||| | | || Sbjct 48274 GGTGCCGTTAGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGAGACC 48333 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || |||||| ||||||||| | || || ||||| ||||||||||| ||||| Sbjct 48334 AATACCACCGGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCCTC 48393 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| ||||| ||||| |||||| || | || | || || Sbjct 48394 AATGCTATCGTCCTTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTCCC 48453 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 || |||||||| || || Sbjct 48454 AGCATTGAAGAGAGTTGG 48471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107097757335085