Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq19 154 2e-31
seq52 129 7e-24
seq99 111 2e-18
seq122 109 7e-18
>seq19
Length=350955
Score = 154 bits (170), Expect = 2e-31
Identities = 230/322 (71%), Gaps = 7/322 (2%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || |||||| |||||| |||||||||||||| | || |||||
Sbjct 190151 GCCTTCTGGTAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATG 190092
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | ||| ||| ||| ||||| | | |
Sbjct 190091 TTCTCCATGAAGTCGAAGGGGTTGGTGGAGCGGTACACCTTCTCGTTGCCGAGGGCCACC 190032
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |
Sbjct 190031 AGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCATGCCTAGT 189972
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || ||||| | ||| ||| ||||| | ||| || |||||| ||| ||||
Sbjct 189971 AGGGCACAGGGCAGAGCCTCCGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATG 189912
Query 868931 ATCTGCCTGGGCACGTC--GGCCGAGG-GCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987
|||| | | |||||| |||| || | ||||||| | | | | | |||||||||
Sbjct 189911 ATCTTCTCGACCACGTCCTTGCCGGGGCGGTTGTTGAGGTG---GGAGAACAGCAGGCAG 189855
Query 868988 GCAAAGTCGCAGTGCA-ACCCT 869008
|| |||||| ||||| |||||
Sbjct 189854 GCGAAGTCGGTGTGCAGACCCT 189833
Score = 123 bits (136), Expect = 3e-22
Identities = 197/280 (70%), Gaps = 11/280 (4%)
Strand=Plus/Minus
Query 869187 CGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCC 869246
||||| ||| | ||||||| |||| || ||||||||||| || |||||||||||||
Sbjct 189827 CGCGA--GATGAGTTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCC 189770
Query 869247 AAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGA 869306
| ||||||| ||| || ||| ||||| ||||| || ||||| ||| | || |
Sbjct 189769 AGAAGATGGAAGCGAAGGCTCCACTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAA 189710
Query 869307 GCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGCCCAGTCGG 869363
| || | ||| |||||| || || ||||| | ||||| | || ||||||||||
Sbjct 189709 GACGTTGGGCGAAGGTG--GA----CTTCTTGTCGGCAATCCAGTGCAGGGCCCAGTCGG 189656
Query 869364 CCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCG 869423
|||| || | | | || | || || ||||| ||||| || ||| | ||| |
Sbjct 189655 CCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCATTGAAGAGATGTGTCTTCTGGGCAG 189596
Query 869424 GGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| ||||||| |||||||| || ||||| || || |||||
Sbjct 189595 GCTCCTTGATGTAGGTGTCAATGAGGAGGGAGTAAGTCTC 189556
>seq52
Length=227583
Score = 129 bits (142), Expect = 7e-24
Identities = 95/111 (86%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
||||||| |||||||||||| |||| | ||| |||| |||||| |||| ||||||||||
Sbjct 91699 CCAACTATCTCGACATCAAGGCTCTCTTGGATGTTGGTTGCAAGACTGTTGCCAACATGA 91758
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||| |||||||||||||| ||||| || ||||| | | |||
Sbjct 91759 TCAAGGGCAAGTCTCCCGAGGAGATCCGTAAGACGTTCAACATTACGAACG 91809
>seq99
Length=160603
Score = 111 bits (122), Expect = 2e-18
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 1574058 CTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCG 1574117
|| |||||||| ||||||||| | | ||||||||||| |||||| || | || ||||
Sbjct 133274 CTTCCGCCCGGCCGCCACAAGATTGTGATCCTCGACGAAGCCGACAGCATGACCTCGGGA 133333
Query 1574118 GCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTG 1574177
|||||||| || || ||| || ||||| | || |||| ||||||||||| ||| |
Sbjct 133334 GCCCAGCAAGCGCTACGGCGTACGATGGAGATCTACTCCAATACGACGCGCTTCGCCTTC 133393
Query 1574178 GCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236
|| || ||| |||| | | | ||||| |||| ||| || ||||||||||| ||
Sbjct 133394 GCATGTAACCAGTCGAACAAGATTATCGAACCCCTGCAATCCCGATGCGCCATTCTACG 133452
>seq122
Length=136518
Score = 109 bits (120), Expect = 7e-18
Identities = 179/258 (69%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||| || ||||| | || |||| || ||||| || |||||||| || | |||||| ||
Sbjct 48214 CTGATCTACGTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGA 48273
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||| ||||| || | ||| | ||| | || || | ||| | | ||
Sbjct 48274 GGTGCCGTTAGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGAGACC 48333
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || |||||| ||||||||| | || || ||||| ||||||||||| |||||
Sbjct 48334 AATACCACCGGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCCTC 48393
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| |||||||||| ||||| ||||| |||||| || | || | || ||
Sbjct 48394 AATGCTATCGTCCTTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTCCC 48453
Query 1630305 GGCGTTGAAGAGCGTGGG 1630322
|| |||||||| || ||
Sbjct 48454 AGCATTGAAGAGAGTTGG 48471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107097757335085
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |