Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq19 154 2e-31
seq99 118 2e-20
seq52 111 2e-18
seq122 96.9 5e-14
seq326 89.7 8e-12
seq1 86.0 1e-10
>seq19
Length=350955
Score = 154 bits (170), Expect = 2e-31
Identities = 229/322 (71%), Gaps = 11/322 (3%)
Strand=Plus/Minus
Query 794348 CGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCC 794407
||||| ||| | ||||||| ||| || ||||||||||| || |||||||||||||
Sbjct 189827 CGCGA--GATGAGTTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCC 189770
Query 794408 AAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGA 794467
| ||||||| | ||| || ||| ||||| ||||| || ||||| ||| | | |
Sbjct 189769 AGAAGATGGAAGCGAAGGCTCCACTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAA 189710
Query 794468 GCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTG---ATCCACTTCATCGCCCACTCTG 794524
| || | ||| || ||| | | |||| || | ||||| | || ||||| || |
Sbjct 189709 GACGTTGGGCGAAGGTG-----GACTTCTT-GTCGGCAATCCAGTGCAGGGCCCAGTCGG 189656
Query 794525 CCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCG 794584
|||| || | | | || | || || ||||| ||||| || ||||| | | |
Sbjct 189655 CCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCATTGAAGAGATGTGTCTTCTGGGCAG 189596
Query 794585 GGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGG 794644
| ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||| || ||
Sbjct 189595 GCTCCTTGATGTAGGTGTCAATGAGGAGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCA 189536
Query 794645 CGATCTGGAAGCCATAAAAGCA 794666
|||||||||||| || |||||
Sbjct 189535 TGATCTGGAAGCCGTAGAAGCA 189514
Score = 150 bits (166), Expect = 3e-30
Identities = 232/328 (71%), Gaps = 6/328 (2%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || || || |||||| |||||| |||||||||||||| | |
Sbjct 190159 TGACACCGGCCTTCTGGTAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCCA 190100
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | ||| ||||||| | |||| ||||||| ||||
Sbjct 190099 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGCGGTACACCTTCTCGTTGCCGA 190040
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | | |||||||||||||||||||| || |||||||| ||||||| ||||||||
Sbjct 190039 GGGCCACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCA 189980
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||| | || || |||||| | ||| | | ||||| | ||| || |||||| |
Sbjct 189979 TGCCTAGTAGGGCACAGGGCAGAGCCTCCGTCAGGAACTCCTGCTCAATGGTGACGGCAT 189920
Query 794131 CGATGATGATCTGCCTGGGCACGTC--GGACGACG-GCTTGTCGACGAGCATCGTGTAGA 794187
|| ||||||||| | | |||||| | || | | |||| || | | | | | |
Sbjct 189919 CGGTGATGATCTTCTCGACCACGTCCTTGCCGGGGCGGTTGTTGAGGTG---GGAGAACA 189863
Query 794188 GCAGGCAGGCAAAGTCGCAATGCAGACC 794215
|||||||||| |||||| ||||||||
Sbjct 189862 GCAGGCAGGCGAAGTCGGTGTGCAGACC 189835
>seq99
Length=160603
Score = 118 bits (130), Expect = 2e-20
Identities = 173/245 (71%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 2019195 CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCG 2019254
|| |||||||||||||||||| | | |||||||| || |||||| || | || ||||
Sbjct 133274 CTTCCGCCCGGCCGCCACAAGATTGTGATCCTCGACGAAGCCGACAGCATGACCTCGGGA 133333
Query 2019255 GCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTG 2019314
|||||||| || || || || ||||| | ||| |||| |||||||| || || |
Sbjct 133334 GCCCAGCAAGCGCTACGGCGTACGATGGAGATCTACTCCAATACGACGCGCTTCGCCTTC 133393
Query 2019315 GCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGC 2019374
|| || ||| |||| | | | |||||| |||| || ||| |||||||| | ||
Sbjct 133394 GCATGTAACCAGTCGAACAAGATTATCGAACCCCTGCAATCCCGATGCGCCATTCTACGT 133453
Query 2019375 TTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAA 2019434
| | || | || ||||||||| ||| | ||||||| |||| ||||| || ||
Sbjct 133454 TACGGCCGATTAACGGACGCCCAGGTCGTCAAGCGTCTGATGCAGATCATCGAAGCGGAG 133513
Query 2019435 AAGGT 2019439
|| ||
Sbjct 133514 AAAGT 133518
>seq52
Length=227583
Score = 111 bits (122), Expect = 2e-18
Identities = 91/111 (82%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
||||||| |||||||||||| | ||| | ||| | || |||||||| || |||||| | |
Sbjct 91699 CCAACTATCTCGACATCAAGGCTCTCTTGGATGTTGGTTGCAAGACTGTTGCCAACATGA 91758
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761
||||||||||||| |||||||| ||||| ||||| || ||||| | | |||
Sbjct 91759 TCAAGGGCAAGTCTCCCGAGGAGATCCGTAAGACGTTCAACATTACGAACG 91809
>seq122
Length=136518
Score = 96.9 bits (106), Expect = 5e-14
Identities = 176/258 (68%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||| || || || | || |||| || ||||| || |||||||| |||| |||||| ||
Sbjct 48214 CTGATCTACGTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGA 48273
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
|||||| ||||| || | ||| | ||| | || || | ||| | | ||
Sbjct 48274 GGTGCCGTTAGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGAGACC 48333
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|| || |||||| ||||||||| | || || | || || || |||||||| |||||
Sbjct 48334 AATACCACCGGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCCTC 48393
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
|| ||| |||||||||| | || ||||| |||||| || | | | || ||
Sbjct 48394 AATGCTATCGTCCTTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTCCC 48453
Query 2073780 GGCATTGAAGAGCGTGGG 2073797
||||||||||| || ||
Sbjct 48454 AGCATTGAAGAGAGTTGG 48471
>seq326
Length=28594
Score = 89.7 bits (98), Expect = 8e-12
Identities = 119/163 (73%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||| || |||||||| || || || ||||||||| | || || || ||| |||
Sbjct 8233 GTACTTGGTAACTGCCTTGGTGCCTTCGGACACGGCGTGCTTTGCAAGCTCACCGGGCAG 8292
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590
||||| ||| || | |||||||||||| |||| ||| ||| |||||| || |
Sbjct 8293 GATCAAGCGGACCGAGGTCTGGATCTCTCGGGAAGAGATGGTGGACTTCTTGTT-GTAAG 8351
Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632
| ||||| | ||||||||| ||| || |||| |||||
Sbjct 8352 CAGCCAGCTTGGAAGCCTCGGTGGCGACTCGCTCGAAGATGTC 8394
>seq1
Length=578297
Score = 86.0 bits (94), Expect = 1e-10
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 2411501 GCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGT 2411560
||||||| | ||||||||||||||||| |||| || | || ||||||||||||||||
Sbjct 541455 GCGCAAACGTGAAGATCTTGCGCTGGTCAAGCCCACCGAGTTGCGCGTCGACGTCGAGGT 541396
Query 2411561 GCTGCTCGTCGAGGGCCTGCATGAGCGGGTAG 2411592
|| |||||| | ||| ||||| | ||||||
Sbjct 541395 ACTCCTCGTCTAAGGCTTGCATCAAGGGGTAG 541364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916192680846695
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |