Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq19 154 2e-31 seq99 118 2e-20 seq52 111 2e-18 seq122 96.9 5e-14 seq326 89.7 8e-12 seq1 86.0 1e-10 >seq19 Length=350955 Score = 154 bits (170), Expect = 2e-31 Identities = 229/322 (71%), Gaps = 11/322 (3%) Strand=Plus/Minus Query 794348 CGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCC 794407 ||||| ||| | ||||||| ||| || ||||||||||| || ||||||||||||| Sbjct 189827 CGCGA--GATGAGTTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCC 189770 Query 794408 AAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGA 794467 | ||||||| | ||| || ||| ||||| ||||| || ||||| ||| | | | Sbjct 189769 AGAAGATGGAAGCGAAGGCTCCACTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAA 189710 Query 794468 GCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTG---ATCCACTTCATCGCCCACTCTG 794524 | || | ||| || ||| | | |||| || | ||||| | || ||||| || | Sbjct 189709 GACGTTGGGCGAAGGTG-----GACTTCTT-GTCGGCAATCCAGTGCAGGGCCCAGTCGG 189656 Query 794525 CCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCG 794584 |||| || | | | || | || || ||||| ||||| || ||||| | | | Sbjct 189655 CCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCATTGAAGAGATGTGTCTTCTGGGCAG 189596 Query 794585 GGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGG 794644 | ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||| || || Sbjct 189595 GCTCCTTGATGTAGGTGTCAATGAGGAGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCA 189536 Query 794645 CGATCTGGAAGCCATAAAAGCA 794666 |||||||||||| || ||||| Sbjct 189535 TGATCTGGAAGCCGTAGAAGCA 189514 Score = 150 bits (166), Expect = 3e-30 Identities = 232/328 (71%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || |||||| |||||| |||||||||||||| | | Sbjct 190159 TGACACCGGCCTTCTGGTAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCCA 190100 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | |||| ||||||| |||| Sbjct 190099 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGCGGTACACCTTCTCGTTGCCGA 190040 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | | |||||||||||||||||||| || |||||||| ||||||| |||||||| Sbjct 190039 GGGCCACCAGCAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCA 189980 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || |||||| | ||| | | ||||| | ||| || |||||| | Sbjct 189979 TGCCTAGTAGGGCACAGGGCAGAGCCTCCGTCAGGAACTCCTGCTCAATGGTGACGGCAT 189920 Query 794131 CGATGATGATCTGCCTGGGCACGTC--GGACGACG-GCTTGTCGACGAGCATCGTGTAGA 794187 || ||||||||| | | |||||| | || | | |||| || | | | | | | Sbjct 189919 CGGTGATGATCTTCTCGACCACGTCCTTGCCGGGGCGGTTGTTGAGGTG---GGAGAACA 189863 Query 794188 GCAGGCAGGCAAAGTCGCAATGCAGACC 794215 |||||||||| |||||| |||||||| Sbjct 189862 GCAGGCAGGCGAAGTCGGTGTGCAGACC 189835 >seq99 Length=160603 Score = 118 bits (130), Expect = 2e-20 Identities = 173/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 2019195 CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCG 2019254 || |||||||||||||||||| | | |||||||| || |||||| || | || |||| Sbjct 133274 CTTCCGCCCGGCCGCCACAAGATTGTGATCCTCGACGAAGCCGACAGCATGACCTCGGGA 133333 Query 2019255 GCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTG 2019314 |||||||| || || || || ||||| | ||| |||| |||||||| || || | Sbjct 133334 GCCCAGCAAGCGCTACGGCGTACGATGGAGATCTACTCCAATACGACGCGCTTCGCCTTC 133393 Query 2019315 GCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGC 2019374 || || ||| |||| | | | |||||| |||| || ||| |||||||| | || Sbjct 133394 GCATGTAACCAGTCGAACAAGATTATCGAACCCCTGCAATCCCGATGCGCCATTCTACGT 133453 Query 2019375 TTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAA 2019434 | | || | || ||||||||| ||| | ||||||| |||| ||||| || || Sbjct 133454 TACGGCCGATTAACGGACGCCCAGGTCGTCAAGCGTCTGATGCAGATCATCGAAGCGGAG 133513 Query 2019435 AAGGT 2019439 || || Sbjct 133514 AAAGT 133518 >seq52 Length=227583 Score = 111 bits (122), Expect = 2e-18 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||| |||||||||||| | ||| | ||| | || |||||||| || |||||| | | Sbjct 91699 CCAACTATCTCGACATCAAGGCTCTCTTGGATGTTGGTTGCAAGACTGTTGCCAACATGA 91758 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 ||||||||||||| |||||||| ||||| ||||| || ||||| | | ||| Sbjct 91759 TCAAGGGCAAGTCTCCCGAGGAGATCCGTAAGACGTTCAACATTACGAACG 91809 >seq122 Length=136518 Score = 96.9 bits (106), Expect = 5e-14 Identities = 176/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| || || || | || |||| || ||||| || |||||||| |||| |||||| || Sbjct 48214 CTGATCTACGTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGA 48273 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||| ||||| || | ||| | ||| | || || | ||| | | || Sbjct 48274 GGTGCCGTTAGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGAGACC 48333 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || |||||| ||||||||| | || || | || || || |||||||| ||||| Sbjct 48334 AATACCACCGGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCCTC 48393 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||| | || ||||| |||||| || | | | || || Sbjct 48394 AATGCTATCGTCCTTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTCCC 48453 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||||||||||| || || Sbjct 48454 AGCATTGAAGAGAGTTGG 48471 >seq326 Length=28594 Score = 89.7 bits (98), Expect = 8e-12 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| || |||||||| || || || ||||||||| | || || || ||| ||| Sbjct 8233 GTACTTGGTAACTGCCTTGGTGCCTTCGGACACGGCGTGCTTTGCAAGCTCACCGGGCAG 8292 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||||| ||| || | |||||||||||| |||| ||| ||| |||||| || | Sbjct 8293 GATCAAGCGGACCGAGGTCTGGATCTCTCGGGAAGAGATGGTGGACTTCTTGTT-GTAAG 8351 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 | ||||| | ||||||||| ||| || |||| ||||| Sbjct 8352 CAGCCAGCTTGGAAGCCTCGGTGGCGACTCGCTCGAAGATGTC 8394 >seq1 Length=578297 Score = 86.0 bits (94), Expect = 1e-10 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 2411501 GCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGT 2411560 ||||||| | ||||||||||||||||| |||| || | || |||||||||||||||| Sbjct 541455 GCGCAAACGTGAAGATCTTGCGCTGGTCAAGCCCACCGAGTTGCGCGTCGACGTCGAGGT 541396 Query 2411561 GCTGCTCGTCGAGGGCCTGCATGAGCGGGTAG 2411592 || |||||| | ||| ||||| | |||||| Sbjct 541395 ACTCCTCGTCTAAGGCTTGCATCAAGGGGTAG 541364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916192680846695