Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq244 125 6e-24 seq87 86.0 5e-12 >seq244 Length=60485 Score = 125 bits (138), Expect = 6e-24 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC- 29615 |||||||| | | ||| || ||||| || ||||||||||| || || || || ||||| Sbjct 26645 TGTCCTCCACGGAGACGGAGAACCAAGTGGAGCGTGGATTCCTTCTGGATATTGTAATCG 26586 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 | ||| ||||||| ||| || || || || ||||| | || | | |||||||||||| Sbjct 26585 CTCAA-GGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGG 26527 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTT 29734 ||||| || || ||||| || ||| || | || || | || | ||||| ||| || Sbjct 26526 AGGAATGCCTTCCTTGTCCTG-AATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATT 26468 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || ||||| || || || || || || ||||| |||||||| Sbjct 26467 CAACTTCTAGGGTAATAGTCTTTCCCGTCAATGTCTTGACAAAAATCTGCAT 26416 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || || ||| || || |||||||| || || | | Sbjct 25895 CCACCACGCAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 25836 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || |||||||| || ||||| | ||||||| || || || || ||| Sbjct 25835 AGAGTGCGACCGTCCTCGAGTTGCTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGA 25776 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || ||||| | || | || || || ||| || Sbjct 25775 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAGGATTCGACC 25716 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| || || |||||||| | || || || || |||||||| || Sbjct 25715 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATCTT 25666 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || ||||| || |||||||| || || | | ||| || Sbjct 26175 ACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCC 26116 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | ||||||| ||||| || || ||||||||||| || Sbjct 26115 ATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCCTCCTT 26056 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||| | || | ||||| || || || ||||| || || Sbjct 26055 GTCTTGGATCTTCGACTTAACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGAT 25996 Query 29751 AGTTTTGCCAGTTAAGGTTTTAAC 29774 || || || || | ||| || || Sbjct 25995 GGTCTTTCCGGTAAGGGTCTTGAC 25972 >seq87 Length=177310 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | |||||| ||| || || || ||||| || || | | || || Sbjct 65639 CGGAGGACGAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCG 65580 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||| ||||| || | |||| || ||||| || || ||||||||||| ||| Sbjct 65579 TCTTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTG 65520 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | ||||| | || || ||||| || ||| Sbjct 65519 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATA 65460 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || || |||||||| Sbjct 65459 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 65425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216829096205