Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq122 152 5e-32
seq87 111 2e-19
seq5 109 5e-19
seq244 107 2e-18
>seq122
Length=136518
Score = 152 bits (168), Expect = 5e-32
Identities = 867/1359 (64%), Gaps = 65/1359 (5%)
Strand=Plus/Plus
Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTT 148109
|| ||| ||||||||||||||| ||||||||||||||||| | ||| | ||| ||
Sbjct 46955 GATTGGGACTGGTCAATGAACGCACCACGGTCAGCGGCCATCTGGACAACGGTTCG--TT 47012
Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169
| || |||||| | |||||||| || |||||||| | | |||||| | ||||
Sbjct 47013 GGGAT-ATTTCCCAGACGGTCTTGTAAAGAGCCTTGATATCAGCAGGAATGTTGGGGATG 47071
Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229
||| | || |||| | |||| || | || ||| || | | ||
Sbjct 47072 TTCTGAATTGAACCGCCCTCGGCAATGATACGGTTCTTCATGCTATCAGACCAGAGACCC 47131
Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289
| || | ||||| | || || | | || || ||||| |||||||| ||||| ||
Sbjct 47132 ATGTCAACAAGGTCCTTGAGCAACCAGGGGTTAACGACCTGGAACTCGCCAGCGAGGACA 47191
Query 148290 CGCCGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348
|| || ||| || | |||| || | || || || |||| ||||| ||||| |||||
Sbjct 47192 CGGCG-AGAGTAGATGTTGGAAGTGTAAGGCTCGAAGCACTCATTGTTACCCAAGATCTG 47250
Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTT- 148407
| || | |||||||||||| || |||| || |||||||| ||| |||||
Sbjct 47251 GGATGTGCTGGCCGTGGGCATGGGGGCGACCAACAAGCTGTTGCGCACACC---ATTTTG 47307
Query 148408 -TTATTTTGC-GCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACAT 148465
|| ||||| ||| || | ||||||||| || ||| || || || ||||||||
Sbjct 47308 CTTGATTTGCTCCTTGAGGCTGGTCCAGTCCCAAAGATCCGATGGGGTGACATTCCACAT 47367
Query 148466 GTCGTACTGCAGAATGCCGCGGCTAG-CGGGGCTGCCCTCGTACGAGCTGTACGGTCCGT 148524
|||||| || || ||||| | || || |||| |||||||| | ||| || || |
Sbjct 47368 GTCGTATTGAAGGATGCC-CTGCGAGACGGGAGAACCCTCGTAGGTAGAGTAAGGGCCTT 47426
Query 148525 GCGCCGCCGCCAGTTCGCAGCTCGC-CTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATT 148583
|| || | || | ||| || || ||| | | ||| ||||||||| ||
Sbjct 47427 CGACCTTGGCAATCTCCGTGGACGCAGTCAAG-GCGGCATGGTAGATCGTCTCGAAGATC 47485
Query 148584 TGCCTGTTGAGCAGCGCCGCCGACTCG-CTTTCGTACGGCATACGCAGCCGCACAAACGC 148642
||| |||| | | ||| || | || | |||||||||| || || |
Sbjct 47486 TGCTTGTTTAATTGTCTAGCC-TCTGGTGACTCAAAAGGCATACGCAATGCCAAGAATGT 47544
Query 148643 GTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGC 148702
|| ||||| ||||| || || | |||||||| |||||| |||||| | || ||
Sbjct 47545 ATCAGCAAGACCCTGAACACCAAGACCAATGGGACGGTGTCGCATGTTGCTGTTACGGGC 47604
Query 148703 GCTCT-CGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCT 148761
|||| || || || | ||| || || || ||| | |||| | || || || |
Sbjct 47605 -CTCTGGGACGGGGTAATAATTGACATCAATAATTCTGTTCAAATTGTGAACGACGACTT 47663
Query 148762 TTGTAA--TTCTGC----GCAGCAATTCAAAA------TCGTACTTGTCATCTACGATGC 148809
|||| | ||| | | || ||| || |||| | |||| || | |
Sbjct 47664 GGGTAACCTCATGCAACTTCTGGAAGTCATAAGTGCCTTCGTTATAGTCA---ACAAAGG 47720
Query 148810 ATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACT 148869
| ||| || |||| || |||| ||||| || ||| |||||| |||||| |||||
Sbjct 47721 A-CGG--CAACGCGAGGGAAGCTAAGTTGCAGACAGCCACCTCATCAGGGGCGGAGTACT 47777
Query 148870 CTACGATCTCGGCGCACAGATT---GCTGCATTTGATCACGCCCACG-TTCTTTTGATTG 148925
| | |||||||| ||| ||||| ||||| || | ||| | ||||| || ||
Sbjct 47778 CAATGATCTCGGTGCAAAGATTCGAGCTGC----GAATAGTACCAAGATTCTTCTGGTTA 47833
Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTT 148985
||||||| |||||| |||||||| |||||| | || ||||| || ||| |
Sbjct 47834 CTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAAGGGATTTCCAGTCTCAGTCTGAGCC 47893
Query 148986 TCCACTAT---GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCC 149042
|| | || | ||| ||| | ||| || | | ||| | |||||||| |
Sbjct 47894 TCGAGAATGGCGTACC---ACAGCTTCTGAGCCTTAATCTTCTGGCGGCCGCGACCCT-C 47949
Query 149043 TGC-TCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGG 149101
||| ||||| ||||| ||||||| | ||||| || || | ||||| ||
Sbjct 47950 TGCTTCGTACTTCTCGTACAGGGCCTCGAACTCATCGCCATAAACGTCAGCTAGACCAGG 48009
Query 149102 GCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAG 149161
||||| || || |||||||| | |||| | || | | | || || ||||| || ||
Sbjct 48010 GCACTCGTTAGGACACATGAGGGTCCACTCTCCATTCTTCTCAACACGTTTCATGAAGAG 48069
Query 149162 ATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTT 149221
||| || | |||||| || | ||| ||||| || || || ||| |||
Sbjct 48070 ATCAGGAATCCAGAGAGCCAGGAAGAGATCGCGGGCACGAACTTCCTCCTTGCCATGGTT 48129
Query 149222 GCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAG 149281
|| || | || | ||| | |||| |||||| ||||| | ||| | ||||
Sbjct 48130 CTTTCGAAGATCAAGGAACTCGAAAACATCCGAGTGCCAAGGCTCGAGGTAGATGGCGAA 48189
Query 149282 CGCGCC------CTTGCGCTTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACAC 149335
|| || |||| ||||| ||||| || |||| | | |||| || || ||
Sbjct 48190 AGCACCAGGTCTCTTG---TTGCCACCCTGATCTACGTATCTTGCAGTGTTATTGAAGAC 48246
Query 149336 TCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGT 149374
|| | ||| ||| ||||||| | | |||||||||||
Sbjct 48247 ACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTTAGT 48285
>seq87
Length=177310
Score = 111 bits (122), Expect = 2e-19
Identities = 150/207 (72%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514
||| | |||| ||| ||||| || ||||| ||| | || ||| ||| |||||
Sbjct 65628 ATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGT--ACGGCCGTCTTCGAGT 65571
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|||||||| ||| | || || |||||||||||||| || || || |||||||| ||||
Sbjct 65570 TGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATC 65511
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||||| | || | |||||| | | |||||| || | ||||| || |||||
Sbjct 65510 TTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCC 65451
Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661
|| || || || ||||| |||||||||
Sbjct 65450 GTGAGGGTCTTGACGAAGATCTGCATG 65424
>seq5
Length=467666
Score = 109 bits (120), Expect = 5e-19
Identities = 140/191 (73%), Gaps = 4/191 (2%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTG 133520
||||||||||||||| || ||||| ||| | || || | |||||| || ||||||
Sbjct 48663 GGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCC--GTCCTCAAGTTGCTTG 48606
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| | || || ||||| |||||||| || ||||| |||||||| |||||| |
Sbjct 48605 CCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGAC 48546
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|||| | || | ||||||| | |||||| |||| ||||| || || || || ||
Sbjct 48545 TTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTAAGG 48486
Query 133641 GTTTTTACGAA 133651
|| || |||||
Sbjct 48485 GTCTTCACGAA 48475
>seq244
Length=60485
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
||||| || ||||| ||||||||||||| || ||| ||| | || || |||||||| ||
Sbjct 26612 GTGGATTCCTTCTGGATATTGTAATCGCTCAAGGTGCGACCA-TCTTCCAGCTGCTTACC 26554
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | ||||| || ||||| || ||||| |||||||||||||| ||||| |||
Sbjct 26553 AGCGAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGCTCTT 26494
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | ||||||| | || || || | ||| | || || || |||| ||
Sbjct 26493 CACGTTGTCGATGGTGTCGGAAGATTCAACTTCTAGGGTAATAGTCTTTCCCGTCAATGT 26434
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || |||||||||||
Sbjct 26433 CTTGACAAAAATCTGCAT 26416
Score = 104 bits (114), Expect = 2e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
|||| ||| ||||| || ||||| ||| | ||| ||| ||||||||| ||||| |
Sbjct 25866 GGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACC-GTCCTCGAGTTGCTTTC 25808
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| |||| | ||||| ||||||||||| || || |||||||| |||||| ||
Sbjct 25807 CAGCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACT 25748
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | || || | || || || || | |||| ||| ||||| || ||||
Sbjct 25747 TGACGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAG 25688
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||| ||||||||
Sbjct 25687 TCTTGACGAAGATCTGCAT 25669
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/188 (72%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| || || ||||| || ||||| ||| || || | | | ||||| |||||||||||
Sbjct 26156 GTCGATTCCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCA-TCCTCAAGCTGCTTGCC 26098
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| | ||||||||||| ||||| || || |||||||| |||||| |||
Sbjct 26097 GGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGGATCTTCGACTT 26038
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | ||||||| | ||| || || | ||||| ||| || ||||| || ||
Sbjct 26037 AACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTTCCGGTAAGGGT 25978
Query 133643 TTTTACGA 133650
|| ||||
Sbjct 25977 CTTGACGA 25970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483417748406200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |