Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq122 214 2e-50
seq19 113 6e-20
>seq122
Length=136518
Score = 214 bits (236), Expect = 2e-50
Identities = 574/869 (66%), Gaps = 18/869 (2%)
Strand=Plus/Plus
Query 69352 ATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAAC 69411
||||| || ||||| | ||| |||||||| ||| ||| ||||||||||| || ||
Sbjct 47810 ATAGTACCAAGATTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAAG 47869
Query 69412 GGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT- 69470
||| | ||||| ||| |||||| |||| ||| | | ||| | | ||| || ||
Sbjct 47870 GGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGCGTACCACAGCTTCTGAGCCTTAATC 47929
Query 69471 TACGGTCTTGTAACGCTTCTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCT 69528
| | | | | || |||| ||| || || | ||| | ||| ||||| |||||
Sbjct 47930 TTCTGGCG-GCCGCGACCCTCTGCTTCGTACTTCTCGTACAGGGCC--TCGAACTCATCG 47986
Query 69529 CCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCA 69588
|| |||| ||| | | ||||| || || || |||||||| | | |||| | |||
Sbjct 47987 CCATAAACGTCAGCTAGACCAGGGCACTCGTTAGGACACATGAGGGTCCACTCTCCATTC 48046
Query 69589 TCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTT 69648
| || ||| |||||||| || ||||| |||||||| ||||| | |||||||| | ||
Sbjct 48047 TTCTCAACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCCAGGAAGAGATCGCGGGCA 48106
Query 69649 CTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGC 69708
| | ||| || || || || ||| |||||| || ||||| | || ||| || |||
Sbjct 48107 CGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCGAAAACATCCGAGTGC 48166
Query 69709 CATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTAT 69768
|| || || || || || || | | || |||| || || || |||||||||| ||||
Sbjct 48167 CAAGGCTCGAGGTAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACCCTGATCTACGTAT 48226
Query 69769 CTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTT 69828
|| ||||||||||| |||| | ||||| || | ||| || || || | || || ||
Sbjct 48227 CTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTTAGTG 48286
Query 69829 CCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCC 69888
|||| ||| || || | || || || || ||||| || || || |||
Sbjct 48287 CCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGAGACCAATACCACCGGCC 48346
Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948
|| || ||||| | |||||| || | ||||| || |||||||| |||||||| ||
Sbjct 48347 ATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCCTCAATGCTATCGTCC 48406
Query 69949 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAAT 70008
|||||| | || || || || | || || || || ||||| || |
Sbjct 48407 TTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTCCCAGCATTGAAGAGA 48466
Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068
|| || || || |||||||| |||| ||| | || ||||| || | ||| |
Sbjct 48467 GTTGGGGAAGCATGAGTGAAGTATTTGCTAGACATGAGGTTGTAGGTCTGAATGACCTTC 48526
Query 70069 TCTATATC----CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCG 70124
|| | ||| || | |||| || | || |||||||| | ||||||||| ||||
Sbjct 48527 TCAACATCGTCGCCCCAGATG----CCGACAGCCACACGCATGATCATATGCTGTGGTCT 48582
Query 70125 TTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAA 70184
|| || | || | | | || | ||||| ||| |||| ||| || || || ||
Sbjct 48583 CTCCACGATCTTGTCGTCAAGCTTAAGTAGGTAAGATCGCTCCAAAGTCTTGAAGCCGAA 48642
Query 70185 ATAGTTGTA--TGAAAAGTCTCTTTCGTA 70211
|| | ||| ||||| ||||| || ||
Sbjct 48643 GTATTGGTAGTTGAAA--TCTCTGTCATA 48669
>seq19
Length=350955
Score = 113 bits (124), Expect = 6e-20
Identities = 370/569 (65%), Gaps = 12/569 (2%)
Strand=Plus/Minus
Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667
|||| | |||||||||||| || || |||||||| | || | |||||| ||
Sbjct 189866 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAG 189807
Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727
|| || || || ||||| ||||||||||| |||||||| || |||| ||| || | ||||
Sbjct 189806 AAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCA 189747
Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787
|||||||| || || || || || || |||| ||| | | || || || | |
Sbjct 189746 CTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAAGACGTTGGGCG-AAGGTGGA-CT 189689
Query 39788 TTATGT-----ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842
| ||| ||||| | | | ||||| || || ||||| | ||||| || || |
Sbjct 189688 TCTTGTCGGCAATCCAGTGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCT 189629
Query 39843 CTATAGCATTAAAGAGATAATGT-TTTTCATCACTATCTTTAACATATGTATCTATTAAC 39901
| || ||||| ||||||| ||| || | || || || | || || || || |
Sbjct 189628 CAATGGCATTGAAGAGAT-GTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGG 189570
Query 39902 AGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTT 39961
|| || | || || |||||||| || ||| ||||| || ||||| || ||||
Sbjct 189569 AGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGG 189510
Query 39962 GCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCA 40021
|| || | || || ||||| | | |||| || | | || || || || || ||
Sbjct 189509 GCCTCTGGGATCTGGACCTCGCCAGAGAATCGCTCGACAAGGTTCTCGTTGACAATGCCG 189450
Query 40022 TCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTT---TTCATCGGGTGTC 40078
||| ||||| || || || | | || || || |||| |||||| |
Sbjct 189449 TCAGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGAATTTCTCGTCATCGTTTAGG 189390
Query 40079 AATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGAC 40138
|| ||||||| | || ||| || |||| ||| | || || || ||||| || ||
Sbjct 189389 CGGTTGCTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCGGTCCAGAAGGAA 189330
Query 40139 GCCTCTGCCTTTTTGTACATGTTCCATAT 40167
|| || ||| |||||||| | ||| ||
Sbjct 189329 GCTTCGTGCTTCTTGTACATCTGCCAGAT 189301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686904463888200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |