Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq122 214 2e-50 seq19 113 6e-20 >seq122 Length=136518 Score = 214 bits (236), Expect = 2e-50 Identities = 574/869 (66%), Gaps = 18/869 (2%) Strand=Plus/Plus Query 69352 ATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAAC 69411 ||||| || ||||| | ||| |||||||| ||| ||| ||||||||||| || || Sbjct 47810 ATAGTACCAAGATTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAAG 47869 Query 69412 GGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT- 69470 ||| | ||||| ||| |||||| |||| ||| | | ||| | | ||| || || Sbjct 47870 GGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGCGTACCACAGCTTCTGAGCCTTAATC 47929 Query 69471 TACGGTCTTGTAACGCTTCTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCT 69528 | | | | | || |||| ||| || || | ||| | ||| ||||| ||||| Sbjct 47930 TTCTGGCG-GCCGCGACCCTCTGCTTCGTACTTCTCGTACAGGGCC--TCGAACTCATCG 47986 Query 69529 CCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCA 69588 || |||| ||| | | ||||| || || || |||||||| | | |||| | ||| Sbjct 47987 CCATAAACGTCAGCTAGACCAGGGCACTCGTTAGGACACATGAGGGTCCACTCTCCATTC 48046 Query 69589 TCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTT 69648 | || ||| |||||||| || ||||| |||||||| ||||| | |||||||| | || Sbjct 48047 TTCTCAACACGTTTCATGAAGAGATCAGGAATCCAGAGAGCCAGGAAGAGATCGCGGGCA 48106 Query 69649 CTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGC 69708 | | ||| || || || || ||| |||||| || ||||| | || ||| || ||| Sbjct 48107 CGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAAGGAACTCGAAAACATCCGAGTGC 48166 Query 69709 CATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTAT 69768 || || || || || || || | | || |||| || || || |||||||||| |||| Sbjct 48167 CAAGGCTCGAGGTAGATGGCGAAAGCACCAGGTCTCTTGTTGCCACCCTGATCTACGTAT 48226 Query 69769 CTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTT 69828 || ||||||||||| |||| | ||||| || | ||| || || || | || || || Sbjct 48227 CTTGCAGTGTTATTGAAGACACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTTAGTG 48286 Query 69829 CCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCC 69888 |||| ||| || || | || || || || ||||| || || || ||| Sbjct 48287 CCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGGATGTTGAGACCAATACCACCGGCC 48346 Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948 || || ||||| | |||||| || | ||||| || |||||||| |||||||| || Sbjct 48347 ATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCGTAGATACCCTCAATGCTATCGTCC 48406 Query 69949 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAAT 70008 |||||| | || || || || | || || || || ||||| || | Sbjct 48407 TTCATGTCGACGAGGAAGCAAGACGAGAGCTGGGCCTGGGGTGTCCCAGCATTGAAGAGA 48466 Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068 || || || || |||||||| |||| ||| | || ||||| || | ||| | Sbjct 48467 GTTGGGGAAGCATGAGTGAAGTATTTGCTAGACATGAGGTTGTAGGTCTGAATGACCTTC 48526 Query 70069 TCTATATC----CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCG 70124 || | ||| || | |||| || | || |||||||| | ||||||||| |||| Sbjct 48527 TCAACATCGTCGCCCCAGATG----CCGACAGCCACACGCATGATCATATGCTGTGGTCT 48582 Query 70125 TTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAA 70184 || || | || | | | || | ||||| ||| |||| ||| || || || || Sbjct 48583 CTCCACGATCTTGTCGTCAAGCTTAAGTAGGTAAGATCGCTCCAAAGTCTTGAAGCCGAA 48642 Query 70185 ATAGTTGTA--TGAAAAGTCTCTTTCGTA 70211 || | ||| ||||| ||||| || || Sbjct 48643 GTATTGGTAGTTGAAA--TCTCTGTCATA 48669 >seq19 Length=350955 Score = 113 bits (124), Expect = 6e-20 Identities = 370/569 (65%), Gaps = 12/569 (2%) Strand=Plus/Minus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| | |||||||||||| || || |||||||| | || | |||||| || Sbjct 189866 AACAGCAGGCAGGCGAAGTCGGTGTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAG 189807 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || || || ||||| ||||||||||| |||||||| || |||| ||| || | |||| Sbjct 189806 AAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCA 189747 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 |||||||| || || || || || || |||| ||| | | || || || | | Sbjct 189746 CTGAAGAAGATACCCTCAACAGCGGCGAAGGCAATAAGACGTTGGGCG-AAGGTGGA-CT 189689 Query 39788 TTATGT-----ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 | ||| ||||| | | | ||||| || || ||||| | ||||| || || | Sbjct 189688 TCTTGTCGGCAATCCAGTGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCT 189629 Query 39843 CTATAGCATTAAAGAGATAATGT-TTTTCATCACTATCTTTAACATATGTATCTATTAAC 39901 | || ||||| ||||||| ||| || | || || || | || || || || | Sbjct 189628 CAATGGCATTGAAGAGAT-GTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGG 189570 Query 39902 AGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTT 39961 || || | || || |||||||| || ||| ||||| || ||||| || |||| Sbjct 189569 AGGGAGTAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGG 189510 Query 39962 GCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCA 40021 || || | || || ||||| | | |||| || | | || || || || || || Sbjct 189509 GCCTCTGGGATCTGGACCTCGCCAGAGAATCGCTCGACAAGGTTCTCGTTGACAATGCCG 189450 Query 40022 TCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTT---TTCATCGGGTGTC 40078 ||| ||||| || || || | | || || || |||| |||||| | Sbjct 189449 TCAGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGAATTTCTCGTCATCGTTTAGG 189390 Query 40079 AATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGAC 40138 || ||||||| | || ||| || |||| ||| | || || || ||||| || || Sbjct 189389 CGGTTGCTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCGGTCCAGAAGGAA 189330 Query 40139 GCCTCTGCCTTTTTGTACATGTTCCATAT 40167 || || ||| |||||||| | ||| || Sbjct 189329 GCTTCGTGCTTCTTGTACATCTGCCAGAT 189301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904463888200