Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq19 95.1 4e-14 seq122 86.0 2e-11 >seq19 Length=350955 Score = 95.1 bits (104), Expect = 4e-14 Identities = 125/172 (73%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 || ||||| | | || || | || || || | || || || | || || || || || Sbjct 189693 CACCTTCGCCCAACGTCTTATTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGG-AG 189751 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 | || || |||||||||||| | || |||||||| || |||| |||||||||||| | Sbjct 189752 CCTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCA 189811 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 ||||||| ||| || || |||||| |||| |||||||||||| || || Sbjct 189812 ACGAACTCATCTCGCGTGATGAGGGTCTGCACACCGACTTCGCCTGCCTGCT 189863 >seq122 Length=136518 Score = 86.0 bits (94), Expect = 2e-11 Identities = 215/320 (67%), Gaps = 10/320 (3%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||||||| |||| ||| | ||||| ||||| ||| || | ||||| ||||| || || Sbjct 48268 CGGCATTGTACCCATGCTACGTGTCTTCAATAACACTGCAAGATACGTAGATCAGGGTGG 48209 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG 255090 | ||| | || || || ||| |||||||||| ||||| |||||| | || || Sbjct 48208 CAACAAGAGACCTGGTGCTTTCGCCATCTACCTCGAGCCTTGGCACTCGGATGTTTTCGA 48149 Query 255091 GTTTTTACTGCTGTCCGACAAGACC--GGCACCGAGGAGCTGATCGCCCGCGACATCTAC 255148 ||| | || | | ||| | ||| |||| ||||| | |||||||| ||| | Sbjct 48148 GTTCCT--TGATCTTCGAAAGAACCATGGCAAGGAGGAAGTTCGTGCCCGCGATCTCTTC 48091 Query 255149 ACCGCTGTCTGG--TGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGG 255205 ||| ||||| | ||| |||| || ||| ||| || || | || |||| ||| Sbjct 48090 CTGGCTCTCTGGATTCCTG--ATCTCTTCATGAAACGTGTTGAGAAGAATGGAGAG-TGG 48034 Query 255206 AGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAA 255265 | |||||||||||| ||| | || ||||||| ||| || || || ||||| || Sbjct 48033 ACCCTCATGTGTCCTAACGAGTGCCCTGGTCTAGCTGACGTTTATGGCGATGAGTTCGAG 47974 Query 255266 AAACTGTATCTGGAGTACGA 255285 ||||| | ||||||| Sbjct 47973 GCCCTGTACGAGAAGTACGA 47954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588325722969725