Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq122 226 4e-54 seq19 105 8e-18 seq60 93.3 5e-14 >seq122 Length=136518 Score = 226 bits (250), Expect = 4e-54 Identities = 1019/1591 (64%), Gaps = 39/1591 (2%) Strand=Plus/Plus Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584 |||||||| || || || ||| |||||||||| | || || | | ||| ||||| Sbjct 47018 ATTTCCCAGACGGTCTTGTAAAGAGCCTTGATATCAGCAGGAATGTTGGGGATGTTCTGA 47077 Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 || ||||| ||| | | || | | |||||| | ||||||||||| || | Sbjct 47078 ATTGAACCGCCCTCGGCAATGATACGGTTCTTCATGCTATCAGACCAGAGACCCATGTCA 47137 Query 110645 TTGAGGTCATTGA----CGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCT 110700 ||||| |||| | ||| | || || | ||||| || |||||| | Sbjct 47138 ACAAGGTCCTTGAGCAACCAGGGG----TTAACGACCTGGAACTCGCCAGCGAGGACACG 47193 Query 110701 TCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGC 110760 | ||||||||| | ||||| || || ||||| ||||| ||||||||||| || | Sbjct 47194 GCGAGAGTAGATGTTGGAAGTGTAAGGCTCGAAGCACTCATTGTTACCCAAGATCTGGGA 47253 Query 110761 GGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGAT 110820 ||| ||| || ||||| || || | ||| | ||||| || | ||| || | |||||| Sbjct 47254 TGTGCTGGCCGTGGGCATGGGGGCGACCAACAAGCTGTTGCGCACACCATTTTGCTTGAT 47313 Query 110821 GCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATGTCA 110878 | |||||||| |||||| | || | ||| | || |||| ||||||| Sbjct 47314 TTGCTCCTTGAGGCTGGTCCAGTCCCAAA-GATCCGATGGGGTGACATTCC-ACATGTCG 47371 Query 110879 AACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCT 110938 | ||||| | || || || ||||||||||||| |||| || | |||| | | Sbjct 47372 TATTGAAGGATGCCCTGCGAGACGGGAGAACCCTCGTAGGTAGAGTAAGGGCCTTCGACC 47431 Query 110939 TCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998 | || | || | ||| || || || || || || || || ||||| | Sbjct 47432 TTGGCAATCTCCGTGGACGCAGTCAAGGCGGCATGGTAGATCGTCTCGAAGATCTGCTTG 47491 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATG-CGTAGCGGCACAAAATAAATACATCCGC 111057 || | | | || || ||| ||||| | | || || | | ||| ||| || Sbjct 47492 TTTAATTGTCTAGCCTCTGGTGACTCAAAAGGCATA-CGCAATGCCAAGAATGTATCAGC 47550 Query 111058 GAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC 111117 ||||| |||||||| | |||||| || | ||||||||| || || || || ||| Sbjct 47551 AAGACCCTGAACACCAAGACCAATGGGACGGTGTCGCATGTTGCTGTTACGGGCC-TCTG 47609 Query 111118 A-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176 ||||| ||| |||| ||||| | || ||| | ||| | || | | || | Sbjct 47610 GGACGGGGTAATAATTGACATCAATAATTCTGTTCAAATTGTGAACGACGACTTGGGTAA 47669 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG- 111235 ||||| | || | | ||| |||||| || | || | || || ||| || Sbjct 47670 CCTCATGCAACTTCTGGAAGTCATAAGTGCCT---TCGTTATAGTCA-ACAAAGGACGGC 47725 Query 111236 ---GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292 |||| || || || ||||| |||||| |||||| | | |||||| | || Sbjct 47726 AACGCGAGGGAAGCTAAGTTGCAGACAGCCACCTCATCAGGGGCGGAGTACTCAATGATC 47785 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 || || || | || || || ||| || || | |||||| ||||||||||| |||| Sbjct 47786 TCGGTGCAAAGATTCGAGCTGCGAATAGTACCAAGATTCTTCTGGTTACTCTTGCGGTTG 47845 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 || ||||||||| |||||| |||| | || ||||| ||||| | | |||||| || Sbjct 47846 CAGTGATCCTTGTAAAGCATGAAGGGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGCG 47905 Query 111413 TTCCAAA-CATCGGCGGCTGGTACAA-TGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTG 111470 | ||| | | || | | || | ||||| | | || ||||| || |||||||| Sbjct 47906 TACCACAGCTTCTGAGCCTTAATCTTCTGGCG--GCCGCGACCCTCTGCTTCGTACTTCT 47963 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGAC 111530 ||| ||||| || ||||| || || |||| | ||||| || || || |||| Sbjct 47964 CGTACAGGGCCTCGAACTCATCGCCATAAACGTCAGCTAGACCAGGGCACTCGTTAGGAC 48023 Query 111531 AGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | | || | ||| | ||| | |||||| || |||||||| || || |||||||| | Sbjct 48024 ACATGAGGGTCCACTCTCCATTCTTCTCAACACGTTTCATGAAGAGATCAGGAATCCAGA 48083 Query 111591 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 111650 | | |||||||| | ||| | || || | || ||||| ||| | |||| Sbjct 48084 GAGCCAGGAAGAGATCGCGGGCACGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAA 48143 Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTT 111706 ||||||| | | ||||| |||||| ||||| || |||| |||| || || || | Sbjct 48144 GGAACTCGAAAACATCCGAGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGTCTCT 48203 Query 111707 CGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766 | | ||| | |||| ||| || | || ||| || || || || ||||| || | | Sbjct 48204 TGTTG-CCACCCTGATCTACGTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACA 48262 Query 111767 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGG 111826 || || | || || || || || ||| || | | || | | ||| Sbjct 48263 ATGCCGTTCGAGGTGCCGTTAGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGG 48322 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886 |||| | |||||||| || ||| ||| ||||| ||||| | | || || | Sbjct 48323 ATGTTGAGACCAATACCACCGGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCG 48382 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 |||||||| | || || ||||| || ||| ||||||||| || | ||| || Sbjct 48383 TAGATACCCTCAATGCTATCGTCCTTCATGTCGACGAGGAAGCAAGACGAGAGCTG-GGC 48441 Query 111947 CT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGAC 112003 || ||||| |||||||||||||| ||||| | || ||| |||| || ||| ||| Sbjct 48442 CTGGGGTGTCCCAGCATTGAAGAGAGTTGGGGAAGCATGAGTGAA-GTA-TTTGCTAGAC 48499 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 || || ||| |||| | ||| |||| || || || |||||||| || || Sbjct 48500 ATGAGGTTGTAGGTCTGAATGACCTTCTCAACATCGTCGCCCCAGATGCCGACAGCCACA 48559 Query 112064 CGCATGAACATGTACTGTGGGGTTTCCATGA 112094 ||||||| ||| | |||||| | |||| || Sbjct 48560 CGCATGATCATATGCTGTGGTCTCTCCACGA 48590 >seq19 Length=350955 Score = 105 bits (116), Expect = 8e-18 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| ||||||||||| || || || ||||| || |||||| ||||| ||||||||||| Sbjct 189843 GTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAGAAGGTCAGACCGGGCATGAGACC 189784 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | ||| | || ||||||||||||||| ||| Sbjct 189783 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCACTGAAGAAGATACCCTCAACAGC 189724 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT--TTG-CATCAAACCATTTCAT 122846 || || |||| ||| |||| |||||||| | |||| ||| | ||| ||| | || Sbjct 189723 GGCGAAGGCAATAAGACGTTGGGCGAAGGTG---GACTTCTTGTCGGCAATCCAGTGCAG 189667 Query 122847 TGCCCATTTCGCCTTCTT 122864 ||||| | |||||||| Sbjct 189666 GGCCCAGTCGGCCTTCTT 189649 >seq60 Length=210480 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||||||||||||||| |||| ||||| || ||||| || || | | |||||| Sbjct 200127 GCATCAATCTCATCAATAAAGATGATACACGGCGTATTTTTTCGCGCTGTGGCGAAGAGA 200068 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGC 11747 || | ||| | ||||| |||||||| |||||||| || || | || | || | | Sbjct 200067 TCCCTAACTCGGGACGCACCAACACCAACGAACATCTCAACGAATTCTGAACCGCTTA-C 200009 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 || | |||||| || |||||| || ||| ||||| || || | ||||| |||| Sbjct 200008 GCT-AAAGAATGGTACTCCTGATTCGCCAGCGGTGGCTTTCGCAAGTAATGTCTTACCCG 199950 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854 | || || || ||||||| || || || || ||||| |||||| Sbjct 199949 TTCCAGGGGGTCCAGCGAGAATCGCACCGCGAGGTATCTTCGCACCA 199903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028035548000