Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq122 226 4e-54
seq19 105 8e-18
seq60 93.3 5e-14
>seq122
Length=136518
Score = 226 bits (250), Expect = 4e-54
Identities = 1019/1591 (64%), Gaps = 39/1591 (2%)
Strand=Plus/Plus
Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584
|||||||| || || || ||| |||||||||| | || || | | ||| |||||
Sbjct 47018 ATTTCCCAGACGGTCTTGTAAAGAGCCTTGATATCAGCAGGAATGTTGGGGATGTTCTGA 47077
Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644
|| ||||| ||| | | || | | |||||| | ||||||||||| || |
Sbjct 47078 ATTGAACCGCCCTCGGCAATGATACGGTTCTTCATGCTATCAGACCAGAGACCCATGTCA 47137
Query 110645 TTGAGGTCATTGA----CGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCT 110700
||||| |||| | ||| | || || | ||||| || |||||| |
Sbjct 47138 ACAAGGTCCTTGAGCAACCAGGGG----TTAACGACCTGGAACTCGCCAGCGAGGACACG 47193
Query 110701 TCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGC 110760
| ||||||||| | ||||| || || ||||| ||||| ||||||||||| || |
Sbjct 47194 GCGAGAGTAGATGTTGGAAGTGTAAGGCTCGAAGCACTCATTGTTACCCAAGATCTGGGA 47253
Query 110761 GGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGAT 110820
||| ||| || ||||| || || | ||| | ||||| || | ||| || | ||||||
Sbjct 47254 TGTGCTGGCCGTGGGCATGGGGGCGACCAACAAGCTGTTGCGCACACCATTTTGCTTGAT 47313
Query 110821 GCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATGTCA 110878
| |||||||| |||||| | || | ||| | || |||| |||||||
Sbjct 47314 TTGCTCCTTGAGGCTGGTCCAGTCCCAAA-GATCCGATGGGGTGACATTCC-ACATGTCG 47371
Query 110879 AACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCT 110938
| ||||| | || || || ||||||||||||| |||| || | |||| | |
Sbjct 47372 TATTGAAGGATGCCCTGCGAGACGGGAGAACCCTCGTAGGTAGAGTAAGGGCCTTCGACC 47431
Query 110939 TCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998
| || | || | ||| || || || || || || || || ||||| |
Sbjct 47432 TTGGCAATCTCCGTGGACGCAGTCAAGGCGGCATGGTAGATCGTCTCGAAGATCTGCTTG 47491
Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATG-CGTAGCGGCACAAAATAAATACATCCGC 111057
|| | | | || || ||| ||||| | | || || | | ||| ||| ||
Sbjct 47492 TTTAATTGTCTAGCCTCTGGTGACTCAAAAGGCATA-CGCAATGCCAAGAATGTATCAGC 47550
Query 111058 GAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC 111117
||||| |||||||| | |||||| || | ||||||||| || || || || |||
Sbjct 47551 AAGACCCTGAACACCAAGACCAATGGGACGGTGTCGCATGTTGCTGTTACGGGCC-TCTG 47609
Query 111118 A-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176
||||| ||| |||| ||||| | || ||| | ||| | || | | || |
Sbjct 47610 GGACGGGGTAATAATTGACATCAATAATTCTGTTCAAATTGTGAACGACGACTTGGGTAA 47669
Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG- 111235
||||| | || | | ||| |||||| || | || | || || ||| ||
Sbjct 47670 CCTCATGCAACTTCTGGAAGTCATAAGTGCCT---TCGTTATAGTCA-ACAAAGGACGGC 47725
Query 111236 ---GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 111292
|||| || || || ||||| |||||| |||||| | | |||||| | ||
Sbjct 47726 AACGCGAGGGAAGCTAAGTTGCAGACAGCCACCTCATCAGGGGCGGAGTACTCAATGATC 47785
Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352
|| || || | || || || ||| || || | |||||| ||||||||||| ||||
Sbjct 47786 TCGGTGCAAAGATTCGAGCTGCGAATAGTACCAAGATTCTTCTGGTTACTCTTGCGGTTG 47845
Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412
|| ||||||||| |||||| |||| | || ||||| ||||| | | |||||| ||
Sbjct 47846 CAGTGATCCTTGTAAAGCATGAAGGGATTTCCAGTCTCAGTCTGAGCCTCGAGAATGGCG 47905
Query 111413 TTCCAAA-CATCGGCGGCTGGTACAA-TGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTG 111470
| ||| | | || | | || | ||||| | | || ||||| || ||||||||
Sbjct 47906 TACCACAGCTTCTGAGCCTTAATCTTCTGGCG--GCCGCGACCCTCTGCTTCGTACTTCT 47963
Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGAC 111530
||| ||||| || ||||| || || |||| | ||||| || || || ||||
Sbjct 47964 CGTACAGGGCCTCGAACTCATCGCCATAAACGTCAGCTAGACCAGGGCACTCGTTAGGAC 48023
Query 111531 AGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590
| | || | ||| | ||| | |||||| || |||||||| || || |||||||| |
Sbjct 48024 ACATGAGGGTCCACTCTCCATTCTTCTCAACACGTTTCATGAAGAGATCAGGAATCCAGA 48083
Query 111591 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 111650
| | |||||||| | ||| | || || | || ||||| ||| | ||||
Sbjct 48084 GAGCCAGGAAGAGATCGCGGGCACGAACTTCCTCCTTGCCATGGTTCTTTCGAAGATCAA 48143
Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTT 111706
||||||| | | ||||| |||||| ||||| || |||| |||| || || || |
Sbjct 48144 GGAACTCGAAAACATCCGAGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGTCTCT 48203
Query 111707 CGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766
| | ||| | |||| ||| || | || ||| || || || || ||||| || | |
Sbjct 48204 TGTTG-CCACCCTGATCTACGTATCTTGCAGTGTTATTGAAGACACGTAGCATGGGTACA 48262
Query 111767 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGG 111826
|| || | || || || || || ||| || | | || | | |||
Sbjct 48263 ATGCCGTTCGAGGTGCCGTTAGTGCCAGCAATGTATGAGCCAGTAGCACGGATGCGGTGG 48322
Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886
|||| | |||||||| || ||| ||| ||||| ||||| | | || || |
Sbjct 48323 ATGTTGAGACCAATACCACCGGCCATCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCG 48382
Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946
|||||||| | || || ||||| || ||| ||||||||| || | ||| ||
Sbjct 48383 TAGATACCCTCAATGCTATCGTCCTTCATGTCGACGAGGAAGCAAGACGAGAGCTG-GGC 48441
Query 111947 CT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGAC 112003
|| ||||| |||||||||||||| ||||| | || ||| |||| || ||| |||
Sbjct 48442 CTGGGGTGTCCCAGCATTGAAGAGAGTTGGGGAAGCATGAGTGAA-GTA-TTTGCTAGAC 48499
Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063
|| || ||| |||| | ||| |||| || || || |||||||| || ||
Sbjct 48500 ATGAGGTTGTAGGTCTGAATGACCTTCTCAACATCGTCGCCCCAGATGCCGACAGCCACA 48559
Query 112064 CGCATGAACATGTACTGTGGGGTTTCCATGA 112094
||||||| ||| | |||||| | |||| ||
Sbjct 48560 CGCATGATCATATGCTGTGGTCTCTCCACGA 48590
>seq19
Length=350955
Score = 105 bits (116), Expect = 8e-18
Identities = 144/198 (73%), Gaps = 6/198 (3%)
Strand=Plus/Minus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
||| ||||||||||| || || || ||||| || |||||| ||||| |||||||||||
Sbjct 189843 GTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAGAAGGTCAGACCGGGCATGAGACC 189784
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||| | ||| | || | ||| | || ||||||||||||||| |||
Sbjct 189783 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCACTGAAGAAGATACCCTCAACAGC 189724
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT--TTG-CATCAAACCATTTCAT 122846
|| || |||| ||| |||| |||||||| | |||| ||| | ||| ||| | ||
Sbjct 189723 GGCGAAGGCAATAAGACGTTGGGCGAAGGTG---GACTTCTTGTCGGCAATCCAGTGCAG 189667
Query 122847 TGCCCATTTCGCCTTCTT 122864
||||| | ||||||||
Sbjct 189666 GGCCCAGTCGGCCTTCTT 189649
>seq60
Length=210480
Score = 93.3 bits (102), Expect = 5e-14
Identities = 159/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689
||||||||||||||||| |||| ||||| || ||||| || || | | ||||||
Sbjct 200127 GCATCAATCTCATCAATAAAGATGATACACGGCGTATTTTTTCGCGCTGTGGCGAAGAGA 200068
Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGC 11747
|| | ||| | ||||| |||||||| |||||||| || || | || | || | |
Sbjct 200067 TCCCTAACTCGGGACGCACCAACACCAACGAACATCTCAACGAATTCTGAACCGCTTA-C 200009
Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807
|| | |||||| || |||||| || ||| ||||| || || | ||||| ||||
Sbjct 200008 GCT-AAAGAATGGTACTCCTGATTCGCCAGCGGTGGCTTTCGCAAGTAATGTCTTACCCG 199950
Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854
| || || || ||||||| || || || || ||||| ||||||
Sbjct 199949 TTCCAGGGGGTCCAGCGAGAATCGCACCGCGAGGTATCTTCGCACCA 199903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628028035548000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |