Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq122 203 4e-47 seq19 141 1e-28 >seq122 Length=136518 Score = 203 bits (224), Expect = 4e-47 Identities = 845/1312 (64%), Gaps = 31/1312 (2%) Strand=Plus/Plus Query 118155 AACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTC 118213 ||||| || |||||| || | ||| ||||| |||| ||||| ||||| |||||||| Sbjct 47174 AACTCGCCAGCGAGGACACGGCG-AGAGTAGATGTTGGAAGTGTAAGGCTCGAAGCACTC 47232 Query 118214 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||||||| |||| |||| ||| ||||||||||| || | | | |||||| Sbjct 47233 ATTGTTACCCAAGATCTGGGATGTGCTGGCCGTGGGCATGGGGGCGACCAACAAGCTGTT 47292 Query 118274 ACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGT 118333 || | ||| |||| | | || | |||||||| | |||||| | | || Sbjct 47293 GCGCACACCATTTTGCTTGATTTGCTCCTTGAGGCTGGTCCAGTCCCAAAGATCCGATGG 47352 Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393 | | |||||| || | || ||||| || || || | || || ||||| | || Sbjct 47353 GGTGACATTCCACATGTCGTATTGAAGGATGCCCTGCGAGACGGGAGAACCCTCGTAGGT 47412 Query 118394 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 118453 || ||||| || |||| || | || | | ||| | ||| || || || || Sbjct 47413 AGAGTAAGGGCCTTCGACCTTGGCAATCTCCGTGGACGCAGTCAAGGCGGCATGGTAGAT 47472 Query 118454 TGTTTCAAAAAT--GCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 118511 || || || || || | || |||| || | |||| || ||||| | | || Sbjct 47473 CGTCTCGAAGATCTGCTTGT-TTAATTGTCTAG-CCTCTGGTGACTCAAAAGGCATACGC 47530 Query 118512 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 118571 | | ||| ||| || ||||| || ||||| || ||||| || || |||| ||| Sbjct 47531 AATGCCAAGAATGTATCAGCAAGACCCTGAACACCAAGACCAATGGGACGGTGTCGCATG 47590 Query 118572 TTAGACTTCCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 118630 || || || || ||| ||||| ||| |||| ||| |||| || || | ||| Sbjct 47591 TTGCTGTTACGGGCC-TCTGGGACGGGGTAATAATTGACATCAATAATTCTGTTCAAATT 47649 Query 118631 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTC 118690 | ||| || | || | ||||| | ||| | | | ||| || ||| || | Sbjct 47650 GTGAACGACGACTTGGGTAACCTCATGCAACTTCTGGAAGTCATAAGTGCCT---TCGTT 47706 Query 118691 ATTGACATACTTAGGAAGG----GCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 118746 || | || || |||| || |||| || || | || || |||| |||||| Sbjct 47707 ATAGTCA-ACAAAGGACGGCAACGCGAGGGAAGCTAAGTTGCAGACAGCCACCTCATCAG 47765 Query 118747 TATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCT 118806 | | |||||| || || || ||||| | || || || ||| || || | |||| Sbjct 47766 GGGCGGAGTACTCAATGATCTCGGTGCAAAGATTCGAGCTGCGAATAGTACCAAGATTCT 47825 Query 118807 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCG 118866 | || || ||| ||| || |||||||||||||||| | || | || ||||| | Sbjct 47826 TCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAAGGGATTTCCAGTCTCAG 47885 Query 118867 TTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAG-TGGCGTTGGCTCG 118924 | || | || |||||| || | ||| | | || | || | ||||| | | || Sbjct 47886 TCTGAGCCTCGAGAATGGCGTACCACAGCTTCTGAGCCTTAATCTTCTGGCG--GCCGCG 47943 Query 118925 CCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG 118984 |||||| | |||||||| ||| ||||| || ||||| || || | || | || Sbjct 47944 ACCCTCTGCTTCGTACTTCTCGTACAGGGCCTCGAACTCATCGCCATAAACGTCAGCTAG 48003 Query 118985 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 119044 || || || | || || | ||| | ||| | ||| || |||||| || ||||| Sbjct 48004 ACCAGGGCACTCGTTAGGACACATGAGGGTCCACTCTCCATTCTTCTCAACACGTTTCAT 48063 Query 119045 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 119104 |||||| || || |||||||| ||| ||||||||| || ||| |||| || | || Sbjct 48064 GAAGAGATCAGGAATCCAGAGAGCCAGGAAGAGATCGCGGGCACGAACTTCCTCCTTGCC 48123 Query 119105 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 119164 || || || | || | || || | | ||||| |||||| || || ||||| | Sbjct 48124 ATGGTTCTTTCGAAGATCAAGGAACTCGAAAACATCCGAGTGCCAAGGCTCGAGGTAGAT 48183 Query 119165 CGCGATTGACCC----CTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAA 119220 |||| | || || | | ||| |||| | ||| || || |||||| || | Sbjct 48184 GGCGAAAGCACCAGGTCTCTTGTTG-CCACCCTGATCTACGTATCTTGCAGTGTTATTGA 48242 Query 119221 ATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGA 119278 | ||||| ||||| || | || || | || ||| || || || ||| | ||| Sbjct 48243 AGACACGTAGCATGGGTACAATGCCGTTCGAGGTGCCGTTAGTGCCAGCAATGTATGAGC 48302 Query 119279 CTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 119338 | | | || | || |||||||| | ||||||||| || ||| ||| ||||| Sbjct 48303 C--AGTAGCACGGATGCGGTGGATGTTGAGACCAATACCACCGGCCATCTTGGAGATCAT 48360 Query 119339 CGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 119398 || || | |||| || ||||||| || || || || |||| | ||| ||| Sbjct 48361 GGCACAAGTCTTGAGGGTGTCGTAGATACCCTCAATGCTATCGTCCTTCATGTCGACGAG 48420 Query 119399 GAAGCAGCTCGACATTTGAGGCCTGGG-TGTACCAGCGTTGAAGAGAGTTGG 119449 |||||| ||| | || |||||||| ||| ||||| |||||||||||||| Sbjct 48421 GAAGCAAGACGAGAGCTG-GGCCTGGGGTGTCCCAGCATTGAAGAGAGTTGG 48471 >seq19 Length=350955 Score = 141 bits (156), Expect = 1e-28 Identities = 348/517 (67%), Gaps = 23/517 (4%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| |||||||| ||||| ||||||||||| || |||||| |||||| ||||||||||| Sbjct 189843 GTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAGAAGGTCAGACCGGGCATGAGACC 189784 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | | || | ||| ||||||||| ||||| ||| Sbjct 189783 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCACTGAAGAAGATACCCTCAACAGC 189724 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT--TTGT-ATCAAACCACTTCAT 130203 ||||| |||| ||||| | || |||| ||||| |||| ||| ||| | || Sbjct 189723 GGCGAAGGCAATAAGACGTTGGGCGAAGG---TGGACTTCTTGTCGGCAATCCAGTGCAG 189667 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||| | ||||| || ||| || || | ||||| || || | ||||| | | Sbjct 189666 GGCCCAGTCGGCCTTCTTGCGGATGCAAGGAATGGTCTCAATGGCATTGAAGAGATGTGT 189607 Query 130264 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323 ||| | | || || |||||||| | || ||||| || || || ||| |||| Sbjct 189606 CTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGGGAGTAAGTCTCGGAGTGGAT 189547 Query 130324 CAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 130382 | | ||| || | ||| | ||||||| | || || || ||||| ||||| Sbjct 189546 GTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGGGCCTCTGGGATCTGGACCTCGC 189488 Query 130383 CTGCAAAATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACG 130439 | | | ||| | | || | ||||| ||||| || || || | || || || | Sbjct 189487 CAG-AGAATCG--CTCGACAAGGTTCTCGTTGACAATGCCGTCAGATGCGGCGAAGAAGG 189431 Query 130440 CCAGGATAT---ACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGT 130493 | ||||| | | | | |||||||| ||| ||||| | || | ||||||||| Sbjct 189430 CGAGGATGTGGGAGATGAAGAATTTCTCGTCA---TCGTTTAGGCGGTTGCTCCAGTCGT 189374 Query 130494 CAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||||| || ||||| | |||||| || ||||| Sbjct 189373 GGAGATCCTTGGATAGATCAATCTCCTCGGCGGTCCA 189337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431296127800