Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq122 212 7e-50
seq19 132 5e-26
seq35 87.8 2e-12
>seq122
Length=136518
Score = 212 bits (234), Expect = 7e-50
Identities = 452/673 (67%), Gaps = 4/673 (1%)
Strand=Plus/Minus
Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326
|| ||||| || || || | ||||| || ||||| ||||| || || | ||| |
Sbjct 48492 AAATACTTCACTCATGCTTCCCCAACTCTCTTCAATGCTGGGACACCCCAGGCCCAGCTC 48433
Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386
||| |||||||| || | |||||||| || || || || |||||||| || |||
Sbjct 48432 TCGTCTTGCTTCCTCGTCGACATGAAGGACGATAGCATTGAGGGTATCTACGACACCCTC 48373
Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG-- 53444
||| |||||| ||||||||| | | |||||||| ||| || || || | ||
Sbjct 48372 AAGACTTGTGCCATGATCTCCAAGATGGCCGGTGGTATTGGTCTCAACA--TCCACCGCA 48315
Query 53445 TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504
||||||| | ||| || || || || |||||| | | | || || || || |
Sbjct 48314 TCCGTGCTACTGGCTCATACATTGCTGGCACTAACGGCACCTCGAACGGCATTGTACCCA 48255
Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564
|||| || |||||||| ||||| || | ||||| | |||||||| ||| | |
Sbjct 48254 TGCTACGTGTCTTCAATAACACTGCAAGATACGTAGATCAGGGTGGCAACAAGAGACCTG 48195
Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624
| | |||||||||||||||||||| |||||| | || || | ||||| || || || |
Sbjct 48194 GTGCTTTCGCCATCTACCTCGAGCCTTGGCACTCGGATGTTTTCGAGTTCCTTGATCTTC 48135
Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTC 53684
| ||| || || | || || | || ||| || || || ||||| |||||||
Sbjct 48134 GAAAGAACCATGGCAAGGAGGAAGTTCGTGCCCGCGATCTCTTCCTGGCTCTCTGGATTC 48075
Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744
| || ||||||||| || || |||||| | | |||||| ||| ||||| || ||||
Sbjct 48074 CTGATCTCTTCATGAAACGTGTTGAGAAGAATGGAGAGTGGACCCTCATGTGTCCTAACG 48015
Query 53745 AGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACG 53804
||||||| || || | || || || || ||||| | | |||| || |||||
Sbjct 48014 AGTGCCCTGGTCTAGCTGACGTTTATGGCGATGAGTTCGAGGCCCTGTACGAGAAGTACG 47955
Query 53805 CAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCA 53864
|| |||| ||| | ||||| | ||||| | || | ||| | || || |||
Sbjct 47954 AAGCAGAGGGTCGCGGCCGCCAGAAGATTAAGGCTCAGAAGCTGTGGTACGCCATTCTCG 47895
Query 53865 AGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGA 53924
|| ||| ||||| |||| || | |||| ||||||||| |||| ||||
Sbjct 47894 AGGCTCAGACTGAGACTGGAAATCCCTTCATGCTTTACAAGGATCACTGCAACCGCAAGA 47835
Query 53925 GCAACCAGAAGAA 53937
| |||||||||||
Sbjct 47834 GTAACCAGAAGAA 47822
>seq19
Length=350955
Score = 132 bits (146), Expect = 5e-26
Identities = 475/730 (65%), Gaps = 31/730 (4%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|||||||| || ||||| || || ||||||||||| || ||| ||||||||||||||
Sbjct 190142 TAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCATG 190083
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGG 74579
||||||| ||||| | | | ||| | |||||| || | ||| |||
Sbjct 190082 AAGTCGAAGGGGTTGGTGGAGCGGTACAC---CTTCTCGTTGCCGAGGGCCACCAGCAGG 190026
Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639
|| || || || || | ||||||||| |||| || | |||||| | ||
Sbjct 190025 CGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCATGCCTAGTAGGGCA 189966
Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCT 74697
|| ||||| ||||| || | ||||| ||| | | | | ||| || | ||||
Sbjct 189965 CAGGGCAGAGCCTCCGTCAGGAACTCCTGCTCAA--TGGTGACGGCATCGGTGATGATCT 189908
Query 74698 TGT-GA--ATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCA 74753
| | || | ||| ||| |||| || | | ||||| ||| | ||| | || |||
Sbjct 189907 TCTCGACCACGTCCTTGCCGGGGCGGTTGT---TGAGGTGGGAGAACAGCAGGCA-GGCG 189852
Query 74754 AACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGC 74813
|| || ||| || ||||| | || | ||| || || || | || || |||
Sbjct 189851 AAGTCGGTGTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAGAAGGTCAGACCGGGC 189792
Query 74814 ATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCT 74873
|| || ||||||||||| | ||| ||||||| | ||||| |||||||||||||| ||
Sbjct 189791 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCACTGAAGAAGATACCC 189732
Query 74874 TCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA-------TCGGAAGTCAT 74926
|| ||| || ||||| | ||| ||||| ||||| |||| | |||| | ||
Sbjct 189731 TCAACAGCGGCGAAGGCAATAAGACGTTGGGCGAA-GGTGGACTTCTTGTCGGCA---AT 189676
Query 74927 CCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGCTTGGA 74985
||| | | ||||| || || ||| | | || ||| | || || || || | ||
Sbjct 189675 CCAGTGCAGGGCCCAGTCGGC-CTTCTTGCGGATGCAAGGAATGGTCTCAATGGCATTGA 189617
Query 74986 AGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCT 75045
|||| || ||||| | || ||||||| | ||||||| | || ||||| ||||
Sbjct 189616 AGAGATGTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGGGAGTAAGTCT 189557
Query 75046 CCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCT 75105
| || || || ||| | | |||| | ||||||| | || ||||||| ||||
Sbjct 189556 CGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCTGGGATCT 189497
Query 75106 GTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGA 75165
| || || || || | | | | ||||| |||| |||||||| || |||||||
Sbjct 189496 GGACCTCGCCAGAGAATCGCTCGACAAGGTTCTCGTTGACAATGCCGTCAGATGCGGCGA 189437
Query 75166 AAAAAGCCAG 75175
| || || ||
Sbjct 189436 AGAAGGCGAG 189427
>seq35
Length=266941
Score = 87.8 bits (96), Expect = 2e-12
Identities = 198/293 (68%), Gaps = 6/293 (2%)
Strand=Plus/Minus
Query 117311 ATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTC 117370
|| || |||| ||| |||||||| ||||| ||||| || | |||||| | ||| ||
Sbjct 181171 ATATATCGAGCGCTAGCAGCATCAGAACCACCCGCAAGTCGAGAACCGAAGTTTCCGCTG 181112
Query 117371 GGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTA 117430
|| || | | ||| | || |||| || || ||||| || || | || ||| ||
Sbjct 181111 GGTTCGAGGCAGTTGACATTATTGGAACCGACGAAGTTCTGGGCTAGACCGATAATAGTC 181052
Query 117431 CCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGC 117490
|| || | | |||||||||||||| || ||||| || | || || || ||||
Sbjct 181051 TGCTGCAGAGACACTTCACCATGGTGATAGGCTGTCTGTTCAGAGACATAACCTGCCAAT 180992
Query 117491 TGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGC 117548
| |||||| |||| |||| ||| || || || || |||||||| ||||| |
Sbjct 180991 TCGATAACCTTCTTGTCTTTGAC--CAGATTTCGTTTAAGACAAGCATAAATGACCTTCC 180934
Query 117549 GCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGCTTGATGTC 117600
|||||| ||||| | || | || || ||||| || || ||| || ||||
Sbjct 180933 GCTGACCAGGCTTTAAGCCGT-CGACAACCGAGGGAATGGATCGCATGTTGTC 180882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547212545699000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |