Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq122 212 7e-50 seq19 132 5e-26 seq35 87.8 2e-12 >seq122 Length=136518 Score = 212 bits (234), Expect = 7e-50 Identities = 452/673 (67%), Gaps = 4/673 (1%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 || ||||| || || || | ||||| || ||||| ||||| || || | ||| | Sbjct 48492 AAATACTTCACTCATGCTTCCCCAACTCTCTTCAATGCTGGGACACCCCAGGCCCAGCTC 48433 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 ||| |||||||| || | |||||||| || || || || |||||||| || ||| Sbjct 48432 TCGTCTTGCTTCCTCGTCGACATGAAGGACGATAGCATTGAGGGTATCTACGACACCCTC 48373 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACG-- 53444 ||| |||||| ||||||||| | | |||||||| ||| || || || | || Sbjct 48372 AAGACTTGTGCCATGATCTCCAAGATGGCCGGTGGTATTGGTCTCAACA--TCCACCGCA 48315 Query 53445 TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 ||||||| | ||| || || || || |||||| | | | || || || || | Sbjct 48314 TCCGTGCTACTGGCTCATACATTGCTGGCACTAACGGCACCTCGAACGGCATTGTACCCA 48255 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564 |||| || |||||||| ||||| || | ||||| | |||||||| ||| | | Sbjct 48254 TGCTACGTGTCTTCAATAACACTGCAAGATACGTAGATCAGGGTGGCAACAAGAGACCTG 48195 Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 | | |||||||||||||||||||| |||||| | || || | ||||| || || || | Sbjct 48194 GTGCTTTCGCCATCTACCTCGAGCCTTGGCACTCGGATGTTTTCGAGTTCCTTGATCTTC 48135 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTC 53684 | ||| || || | || || | || ||| || || || ||||| ||||||| Sbjct 48134 GAAAGAACCATGGCAAGGAGGAAGTTCGTGCCCGCGATCTCTTCCTGGCTCTCTGGATTC 48075 Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744 | || ||||||||| || || |||||| | | |||||| ||| ||||| || |||| Sbjct 48074 CTGATCTCTTCATGAAACGTGTTGAGAAGAATGGAGAGTGGACCCTCATGTGTCCTAACG 48015 Query 53745 AGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACG 53804 ||||||| || || | || || || || ||||| | | |||| || ||||| Sbjct 48014 AGTGCCCTGGTCTAGCTGACGTTTATGGCGATGAGTTCGAGGCCCTGTACGAGAAGTACG 47955 Query 53805 CAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCA 53864 || |||| ||| | ||||| | ||||| | || | ||| | || || ||| Sbjct 47954 AAGCAGAGGGTCGCGGCCGCCAGAAGATTAAGGCTCAGAAGCTGTGGTACGCCATTCTCG 47895 Query 53865 AGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGA 53924 || ||| ||||| |||| || | |||| ||||||||| |||| |||| Sbjct 47894 AGGCTCAGACTGAGACTGGAAATCCCTTCATGCTTTACAAGGATCACTGCAACCGCAAGA 47835 Query 53925 GCAACCAGAAGAA 53937 | ||||||||||| Sbjct 47834 GTAACCAGAAGAA 47822 >seq19 Length=350955 Score = 132 bits (146), Expect = 5e-26 Identities = 475/730 (65%), Gaps = 31/730 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 |||||||| || ||||| || || ||||||||||| || ||| |||||||||||||| Sbjct 190142 TAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCCATG 190083 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGG 74579 ||||||| ||||| | | | ||| | |||||| || | ||| ||| Sbjct 190082 AAGTCGAAGGGGTTGGTGGAGCGGTACAC---CTTCTCGTTGCCGAGGGCCACCAGCAGG 190026 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || || || | ||||||||| |||| || | |||||| | || Sbjct 190025 CGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTGGCGTTCATGCCTAGTAGGGCA 189966 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCT 74697 || ||||| ||||| || | ||||| ||| | | | | ||| || | |||| Sbjct 189965 CAGGGCAGAGCCTCCGTCAGGAACTCCTGCTCAA--TGGTGACGGCATCGGTGATGATCT 189908 Query 74698 TGT-GA--ATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCA 74753 | | || | ||| ||| |||| || | | ||||| ||| | ||| | || ||| Sbjct 189907 TCTCGACCACGTCCTTGCCGGGGCGGTTGT---TGAGGTGGGAGAACAGCAGGCA-GGCG 189852 Query 74754 AACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGC 74813 || || ||| || ||||| | || | ||| || || || | || || ||| Sbjct 189851 AAGTCGGTGTGCAGACCCTCATCACGCGAGATGAGTTCGTTGGAGAAGGTCAGACCGGGC 189792 Query 74814 ATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCT 74873 || || ||||||||||| | ||| ||||||| | ||||| |||||||||||||| || Sbjct 189791 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCTCCACTGAAGAAGATACCC 189732 Query 74874 TCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA-------TCGGAAGTCAT 74926 || ||| || ||||| | ||| ||||| ||||| |||| | |||| | || Sbjct 189731 TCAACAGCGGCGAAGGCAATAAGACGTTGGGCGAA-GGTGGACTTCTTGTCGGCA---AT 189676 Query 74927 CCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGCTTGGA 74985 ||| | | ||||| || || ||| | | || ||| | || || || || | || Sbjct 189675 CCAGTGCAGGGCCCAGTCGGC-CTTCTTGCGGATGCAAGGAATGGTCTCAATGGCATTGA 189617 Query 74986 AGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCT 75045 |||| || ||||| | || ||||||| | ||||||| | || ||||| |||| Sbjct 189616 AGAGATGTGTCTTCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGGGAGTAAGTCT 189557 Query 75046 CCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCT 75105 | || || || ||| | | |||| | ||||||| | || ||||||| |||| Sbjct 189556 CGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCTGGGATCT 189497 Query 75106 GTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGA 75165 | || || || || | | | | ||||| |||| |||||||| || ||||||| Sbjct 189496 GGACCTCGCCAGAGAATCGCTCGACAAGGTTCTCGTTGACAATGCCGTCAGATGCGGCGA 189437 Query 75166 AAAAAGCCAG 75175 | || || || Sbjct 189436 AGAAGGCGAG 189427 >seq35 Length=266941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 198/293 (68%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 117311 ATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTC 117370 || || |||| ||| |||||||| ||||| ||||| || | |||||| | ||| || Sbjct 181171 ATATATCGAGCGCTAGCAGCATCAGAACCACCCGCAAGTCGAGAACCGAAGTTTCCGCTG 181112 Query 117371 GGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTA 117430 || || | | ||| | || |||| || || ||||| || || | || ||| || Sbjct 181111 GGTTCGAGGCAGTTGACATTATTGGAACCGACGAAGTTCTGGGCTAGACCGATAATAGTC 181052 Query 117431 CCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGC 117490 || || | | |||||||||||||| || ||||| || | || || || |||| Sbjct 181051 TGCTGCAGAGACACTTCACCATGGTGATAGGCTGTCTGTTCAGAGACATAACCTGCCAAT 180992 Query 117491 TGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGC 117548 | |||||| |||| |||| ||| || || || || |||||||| ||||| | Sbjct 180991 TCGATAACCTTCTTGTCTTTGAC--CAGATTTCGTTTAAGACAAGCATAAATGACCTTCC 180934 Query 117549 GCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGCTTGATGTC 117600 |||||| ||||| | || | || || ||||| || || ||| || |||| Sbjct 180933 GCTGACCAGGCTTTAAGCCGT-CGACAACCGAGGGAATGGATCGCATGTTGTC 180882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212545699000