Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq244 98.7 6e-16
seq5 96.9 2e-15
seq87 87.8 1e-12
>seq244
Length=60485
Score = 98.7 bits (108), Expect = 6e-16
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
||||| ||||||||||| |||||||| || || ||||| || || |||| || |||||
Sbjct 25871 TGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCGAGTTGC 25812
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
|| || || || || || ||||||||||| || || | ||||||||||| ||||||
Sbjct 25811 TTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTT 25753
Score = 86.0 bits (94), Expect = 4e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
|| ||||| |||||| |||||||| || || || ||||| | || || | ||
Sbjct 26390 TGCAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTTCGGCCATCCTCCAACTGC 26331
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623
||||| ||||| || | || |||||||| ||||| | |||||||||||| |||| ||
Sbjct 26330 TTACCCGCAAAGATAAGTCGTTGTTGGTCGGGCGGGATTCCCTCCTTGTCCTGGATC-TT 26272
Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682
| ||| ||| | |||||||| |||||| || | || ||||| || |||||
Sbjct 26271 GGATTTGACGTTGTCGATTGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTTGCCGGT 26212
Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706
| || ||||| || || |||||
Sbjct 26211 GAGGGTCTTCACGAAGATTTGCAT 26188
>seq5
Length=467666
Score = 96.9 bits (106), Expect = 2e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | ||||| | || | ||||| ||| ||| || || ||||| || || |||
Sbjct 48692 CCGCCACGGAGACGGAGGACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAA 48633
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| ||||| |||| |||||||| || ||||| || || | |||||||||||| || ||
Sbjct 48632 AGAGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGA 48573
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| ||||||||||| ||||||
Sbjct 48572 ATGCCCTCCTTGTCCTGGATCTT 48550
>seq87
Length=177310
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/209 (70%), Gaps = 8/209 (4%)
Strand=Plus/Minus
Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562
||| || ||||||||||| || ||||| || || || || || || ||||||| |||||
Sbjct 65628 ATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCGAGTTG 65569
Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
|| ||||| || || | ||||| ||||| || || | ||||||||||| |||| |
Sbjct 65568 CTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATC-T 65510
Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCT---CTCCACTTCCACGGTTATCGTTTTAC 34678
| | || || | || ||| ||||| |||||| || | ||| || || || |
Sbjct 65509 TGGACTTGACATTGTCGATGGTG---TCGCTAGACTCCACCTCAAGGGTGATAGTCTTGC 65453
Query 34679 CGGTTAACGTTTTCACAAAAATCTGCATG 34707
| || | || || || || |||||||||
Sbjct 65452 CCGTGAGGGTCTTGACGAAGATCTGCATG 65424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314727662937665
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |