Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq244 96.9 2e-15 seq5 95.1 8e-15 seq87 93.3 3e-14 >seq244 Length=60485 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | |||||||| || || || || |||||||| || | Sbjct 26416 ATGCAGATTTTTGTCAAGACATTGACGGGAAAGACTATTACCCTAGAAGTTGAATCTTCC 26475 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| ||||| ||||| | || || ||||| Sbjct 26476 GACACCATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAG 26535 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || || || |||||||| | ||||| || |||||||||| Sbjct 26536 CAACGTCTCATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCTTGAGCGATTACAAT 26595 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || || ||||| | || || ||| | | | || |||||| Sbjct 26596 ATCCAGAAGGAATCCACGCTCCACTTGGTTCTCCGTCTCCGTGGAGGA 26643 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| || || ||||||||||| || || || || || Sbjct 26188 ATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACGATCACTCTTGAGGTGGAGTCTTCG 26247 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| || || ||||| || || | ||||| || ||| Sbjct 26248 GACACAATCGACAACGTCAAATCCAAGATCCAGGACAAGGAGGGAATCCCGCCCGACCAA 26307 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || ||||| || || || |||| || | || || | |||| |||||| Sbjct 26308 CAACGACTTATCTTTGCGGGTAAGCAGTTGGAGGATGGCCGAACGCTGAGCGACTACAAC 26367 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 26368 ATTCAGAAGGAGTCAAC 26384 >seq5 Length=467666 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 ||||| || ||||| ||||| || || ||||| ||||| || || || | ||||| | Sbjct 48475 TTCGTGAAGACCCTTACGGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCATC 48534 Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || ||| | || | || | | ||||| || || | || || || ||||||||| | Sbjct 48535 GACAATGTCAAGTCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCCGACCAACAGCGTCT 48593 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798 || || |||||||| ||||| || |||| || ||| | ||| |||||||| || || Sbjct 48594 GATCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACAACATCCAGAA 48653 Query 23799 AGAGTCCAC 23807 ||||||||| Sbjct 48654 AGAGTCCAC 48662 >seq87 Length=177310 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || || | Sbjct 65425 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTAGC 65484 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || ||| | || || || || Sbjct 65485 GACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCA 65543 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || |||||||| ||||| ||||||| || ||| | ||| ||||| Sbjct 65544 GCAGCGACTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACTCTCTCCGACTACAA 65603 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 65604 CATCCAGAAGGAG 65616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007519656540