Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq244 161 2e-34
seq5 150 4e-31
seq87 131 4e-25
>seq244
Length=60485
Score = 161 bits (178), Expect = 2e-34
Identities = 154/197 (78%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | |||||| |||||||| || |||| |||||||||| ||| || | ||||||
Sbjct 26627 AGAACCAAGTGGAGCGTGGATTCCTTCTGGATATTGTAATCGCTCAAGGTGCGACCATCT 26568
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || ||||| || || || ||||| |||||||||||
Sbjct 26567 TCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCC 26508
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| |||||| ||||||||||| || | ||| || |||| || || |||
Sbjct 26507 TGAATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCAACTTCTAGGGTAATAGTC 26448
Query 225682 TTGCCCGTCAAAGTTTT 225698
|| |||||||| || ||
Sbjct 26447 TTTCCCGTCAATGTCTT 26431
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||||||||| || |||||||| ||||| || || || || | ||||| ||| || ||
Sbjct 26409 ACGAAGTCTGAGAACAAGGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTCAGCGT 26350
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| ||||| || | |||||| || || |||||||||||||||||||||||||| || ||
Sbjct 26349 TCGGCCATCCTCCAACTGCTTACCCGCAAAGATAAGTCGTTGTTGGTCGGGCGGGATTCC 26290
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| || || ||||| ||||| || | ||||| || |
Sbjct 26289 CTCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATTGTGTCCGAAGACTCCACCTCAAG 26230
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||||||||| || | || || | ||| | ||||||
Sbjct 26229 AGTGATCGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 26188
Score = 140 bits (154), Expect = 8e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||||||||| ||| || || || | ||||| |||| | ||| | || ||
Sbjct 25880 AGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCC 25821
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| |||||||| || | ||| ||||||||||| |||||||| ||||||||
Sbjct 25820 TCGAGTTGCTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 25761
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || |||||||| || |||| ||| || || | ||||| |||
Sbjct 25760 TGGATCTTCGACTTGACGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTC 25701
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || | ||| || | ||| | ||||| ||
Sbjct 25700 TTGCCAGTGAGAGTCTTGACGAAGATCTGCATCTT 25666
Score = 136 bits (150), Expect = 9e-27
Identities = 143/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||| ||||| ||||| || || | ||||| |||| || |||| |||||
Sbjct 26171 AGGACGAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGGGTTCGGCCATCC 26112
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || ||||| || | ||| || ||||| || |||||||| |||||||||
Sbjct 26111 TCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCT 26052
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| || | || || || | ||||| |||
Sbjct 26051 TGGATCTTCGACTTAACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTC 25992
Query 225682 TTGCCCGT 225689
|| || ||
Sbjct 25991 TTTCCGGT 25984
>seq5
Length=467666
Score = 150 bits (166), Expect = 4e-31
Identities = 146/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| |||||||| ||||| ||||| |||| ||||| |||| | ||||| || ||
Sbjct 48677 AGGACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCC 48618
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || |||||||| || || ||||||||||| ||||| || ||||||||
Sbjct 48617 TCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 48558
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| || | ||||| || | ||||| |||
Sbjct 48557 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 48498
Query 225682 TTGCCCGT 225689
|| |||||
Sbjct 48497 TTACCCGT 48490
>seq87
Length=177310
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || || ||| || || |||| ||||| |||| | ||| | || |||
Sbjct 65636 AGGACGAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCT 65577
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || |||||||| ||||| || |||||||| |||||||| ||||||||
Sbjct 65576 TCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCC 65517
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| | ||||| || | ||||| |||
Sbjct 65516 TGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTC 65457
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||| | || || | ||| | |||||
Sbjct 65456 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 65425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192523483950470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |