Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05- 11] 505 sequences; 46,585,682 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq87 129 1e-24 seq244 127 5e-24 seq5 120 7e-22 >seq87 Length=177310 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| |||||||| || ||| || ||||||||||| |||| | ||| | Sbjct 65643 GAGGCGGAGGACGAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACG 65584 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || || ||||||||||| || | ||||||||| | | || || || Sbjct 65583 GCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGAATACCCTC 65524 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || |||||| | || | | |||| | ||| || ||||| || Sbjct 65523 CTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGT 65464 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||||||||| ||||| ||||||| |||||| Sbjct 65463 GATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 65425 >seq244 Length=60485 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||||||| ||||| || ||||| ||||| || || |||||||| ||| | |||| Sbjct 26405 AGTCTGAGAACAAGGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTTCGG 26346 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || | || || || |||||||| | || ||||| | || |||||| ||| Sbjct 26345 CCATCCTCCAACTGCTTACCCGCAAAGATAAGTCGTTGTTGGTCGGGCGGGATTCCCTCC 26286 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || |||||| | || | |||| ||| ||| || |||||||| Sbjct 26285 TTGTCCTGGATCTTGGATTTGACGTTGTCGATTGTGTCCGAAGACTCCACCTCAAGAGTG 26226 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||||||||||| ||||| Sbjct 26225 ATCGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCAT 26188 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || || || ||| || || |||||||| |||| | ||| | || || Sbjct 25881 GAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGACCGTC 25822 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || ||||| || | | ||| ||||| | | || || ||||| Sbjct 25821 CTCGAGTTGCTTT--CCAGCGAAAATCAATCGCTGTTGGTCGGGAGGAATACCCTCCTTG 25764 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || ||||| | || | | | || || || || |||||||| || Sbjct 25763 TCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATG 25704 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| ||||||||||| ||||||| |||||| || Sbjct 25703 GTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATCTT 25666 >seq5 Length=467666 Score = 120 bits (132), Expect = 7e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || || || |||||||| ||||||||||| |||| | ||||| Sbjct 48684 GAGACGGAGGACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTTCG 48625 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||||||||| || | ||| ||||| | | || || || Sbjct 48624 GCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCCTC 48565 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || |||||| | || | | |||| ||| ||| || || || || Sbjct 48564 CTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGT 48505 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 ||||| || ||||| || |||||||||||| Sbjct 48504 GATAGTCTTACCCGTAAGGGTCTTCACGAAG 48474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153813334418855