Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20CO27-5_20[genbank_20GCA_5F002120305.1_202017-05-
11] 505 sequences; 46,585,682 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq87 170 2e-37
seq5 143 2e-29
seq244 134 1e-26
>seq87
Length=177310
Score = 170 bits (188), Expect = 2e-37
Identities = 177/230 (77%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || ||||| || |||||||||||||| ||||| |||||||||
Sbjct 65651 CCACCACGGAGGCGGAGGACGAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 65592
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| ||||| |||||||||||||| ||||| ||||| ||||| | ||||
Sbjct 65591 AGAGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCGGGGGGA 65532
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| || ||| || | || | |||||||| |||||||
Sbjct 65531 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGCTAGACTCCA 65474
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || ||||| || ||||| ||||| |||||||||
Sbjct 65473 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 65424
>seq5
Length=467666
Score = 143 bits (158), Expect = 2e-29
Identities = 165/220 (75%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | || || || || ||| ||| ||||| ||||| ||||||||
Sbjct 48692 CCGCCACGGAGACGGAGGACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAA 48633
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| || || |||||||||||||| ||||| ||||||||||| | ||||
Sbjct 48632 AGAGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGA 48573
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | |||||| |||||||
Sbjct 48572 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTCCA 48515
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853
|||| | || || || |||||||| || ||||| |||||
Sbjct 48514 CCTCGAGGGTGATAGTCTTACCCGTAAGGGTCTTCACGAA 48475
>seq244
Length=60485
Score = 134 bits (148), Expect = 1e-26
Identities = 173/236 (73%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | || || || || |||||||||||||||||||| ||||||||
Sbjct 25896 GCCACCACGCAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 25837
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| ||||| ||||| || ||||| |||| ||||||||||| | ||
Sbjct 25836 AAGAGTGCGACCGTCCTCGAGTTGCTTTCCAGCGAAAATCAATCGCTGTTGGTCGGGAGG 25777
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| | |||||||||| ||| || ||| ||| | | | || || || || |
Sbjct 25776 AATACCCTCCTTGTCCTGGATCTTCGACTT-GACGTTGTCGATGGTATCCGAGGATTCGA 25718
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869
|||| | || || || || || || || ||||| ||||| |||||||| || |||
Sbjct 25717 CCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATCTTGTCG 25662
Score = 116 bits (128), Expect = 3e-21
Identities = 158/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | || || || || || |||||||||||||| ||||||||
Sbjct 26186 CCACCGCGGAGACGGAGGACGAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAGTCGGAC 26127
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || ||||||||||||||||| |||| ||||| ||||| | |||
Sbjct 26126 AGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 26067
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| ||| || ||| ||| | | | |||||| |||||| ||
Sbjct 26066 ATACCCTCCTTGTCTTGGATCTTCGACTT-AACATTGTCGATGGTGTCGGACGACTCGAC 26008
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
||| | || || || || || || || ||||| ||||
Sbjct 26007 CTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGA 25970
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| || ||||| || ||||||||||||||| |||||| || || || | || ||
Sbjct 26396 ACAAGGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTTCGGCCATCCTCC 26337
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
| |||||| || || || || || || |||||||| | || | | |||||||||| ||
Sbjct 26336 AACTGCTTACCCGCAAAGATAAGTCGTTGTTGGTCGGGCGGGATTCCCTCCTTGTCC-TG 26278
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
| || | || ||| | | | ||||| ||||||||||| | || ||||| ||
Sbjct 26277 GATCTTGGATTTGACGTTGTCGATTGTGTCCGAAGACTCCACCTCAAGAGTGATCGTCTT 26218
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || ||||| ||||| || |||||
Sbjct 26217 GCCGGTGAGGGTCTTCACGAAGATTTGCAT 26188
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || |||||| |||||||| || || || |||
Sbjct 26642 CCTCCACGGAGACGGAGAACCAAGTGGAGCGTGGATTCCTTCTGGATATTGTAATCGCTC 26583
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| | || || |||||||| || ||||| || || || || || |||| |||
Sbjct 26582 AAGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATGAGACGTTGCTGATCCGGAGGA 26523
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||||||||| || || ||||| || | | | |||||| || || ||
Sbjct 26522 ATGCCTTCCTTGTCCTGAATCTTGCTCTTCA-CGTTGTCGATGGTGTCGGAAGATTCAAC 26464
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | || || || || ||||||| ||||| || |||||||||||
Sbjct 26463 TTCTAGGGTAATAGTCTTTCCCGTCAATGTCTTGACAAAAATCTGCAT 26416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462301081706000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |