Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq174 84.2 3e-11 >seq174 Length=24208 Score = 84.2 bits (92), Expect = 3e-11 Identities = 176/252 (70%), Gaps = 33/252 (13%) Strand=Plus/Minus Query 2370 ataaaataaataaagaatct--aataattataatttattaaaatCTATGGAAGATTGTAA 2427 ||||| |||||||| ||| | || ||||| |||||||| || ||| | | ||| Sbjct 12537 ATAAAGTAAATAAATAATTTCGAAATATTATTATTTATTATAAA-TAT-----ACTTTAA 12484 Query 2428 A-TGTTTAATAGAAATGTCATATAATTATTTATCAAAGGATAGtttattagaattaatta 2486 | | ||||||| ||| || ||||| | |||| || |||| || ||||| | Sbjct 12483 ACTTTTTAATAATAAT-------AAATATTTTT-AAAGTTTATTTTAATAAAATTATT-- 12434 Query 2487 aaaaattattaaacgaaaatacttttt-taaaatatta---tattcaacaaaacaaaaat 2542 |||||||||| | |||| |||||| ||||| ||| |||| | || ||||| Sbjct 12433 AAAAATTATTTATATAAAA-ACTTTTAATAAAAATTTAAGGTATTAATAAAGTAAAAAAA 12375 Query 2543 taatactttattttttctaaaatacttttaCAATCTGTATTA---TAATAATCTTTAATC 2599 || ||||||||| | |||||| ||||| | | ||||| |||||||||||||| Sbjct 12374 TATTACTTTATTAT----AAAATAATTTTAATAAGTTTATTACTATAATAATCTTTAAT- 12320 Query 2600 CAAATATATTTA 2611 ||||||||||| Sbjct 12319 -AAATATATTTA 12309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743519475910400