Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02-
23] 745 sequences; 39,901,278 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq174 84.2 3e-11
>seq174
Length=24208
Score = 84.2 bits (92), Expect = 3e-11
Identities = 176/252 (70%), Gaps = 33/252 (13%)
Strand=Plus/Minus
Query 2370 ataaaataaataaagaatct--aataattataatttattaaaatCTATGGAAGATTGTAA 2427
||||| |||||||| ||| | || ||||| |||||||| || ||| | | |||
Sbjct 12537 ATAAAGTAAATAAATAATTTCGAAATATTATTATTTATTATAAA-TAT-----ACTTTAA 12484
Query 2428 A-TGTTTAATAGAAATGTCATATAATTATTTATCAAAGGATAGtttattagaattaatta 2486
| | ||||||| ||| || ||||| | |||| || |||| || ||||| |
Sbjct 12483 ACTTTTTAATAATAAT-------AAATATTTTT-AAAGTTTATTTTAATAAAATTATT-- 12434
Query 2487 aaaaattattaaacgaaaatacttttt-taaaatatta---tattcaacaaaacaaaaat 2542
|||||||||| | |||| |||||| ||||| ||| |||| | || |||||
Sbjct 12433 AAAAATTATTTATATAAAA-ACTTTTAATAAAAATTTAAGGTATTAATAAAGTAAAAAAA 12375
Query 2543 taatactttattttttctaaaatacttttaCAATCTGTATTA---TAATAATCTTTAATC 2599
|| ||||||||| | |||||| ||||| | | ||||| ||||||||||||||
Sbjct 12374 TATTACTTTATTAT----AAAATAATTTTAATAAGTTTATTACTATAATAATCTTTAAT- 12320
Query 2600 CAAATATATTTA 2611
|||||||||||
Sbjct 12319 -AAATATATTTA 12309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743519475910400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |