Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq698 127 1e-24 seq27 122 6e-23 seq737 91.5 1e-13 >seq698 Length=460427 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| | ||| || || ||||| |||||||||||||| Sbjct 203287 CCACCACGCAGACGGAGGACAAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAA 203228 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||| || |||||||| | ||||| ||||| ||| Sbjct 203227 AGAGTGCGACCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGTTGGTCAGGGGGG 203168 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | ||| | |||||||| Sbjct 203167 ATGCCCTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATGGTATCCGAGGATTCGACC 203108 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||||||||| || || || |||||||||||| Sbjct 203107 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATC 203060 Score = 107 bits (118), Expect = 1e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| ||| ||||| |||||||||||||| || ||| | || Sbjct 203561 AGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCC 203502 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || | ||||||||||| || | || ||||||||| Sbjct 203501 TCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 203442 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | |||| ||| ||||| |||| |||||||| Sbjct 203441 TGAATCTTCGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCCAAGGTGATGGTC 203382 Query 34358 TTGCCGGTGAGAGTTTTCACAA 34379 || ||||| || || || |||| Sbjct 203381 TTTCCGGTAAGGGTCTTTACAA 203360 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || || ||||| |||||||||||| | Sbjct 203804 CCACCGCGAAGTCGGAGAACAAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGCTC 203745 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || ||||||||||| || || || || || || || |||||| || Sbjct 203744 AGCGTTCGGCCATCCTCCAACTGCTTACCGGCAAAGATAAGTCGTTGTTGGTCGGGCGGG 203685 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| || | | | | |||| || | || || || Sbjct 203684 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATCGTGTCCGAAGACTCCACC 203625 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| |||||||| ||||| || || ||||| Sbjct 203624 TCAAGGGTGATTGTCTTGCCAGTGAGAGTCTTCACGAATATTTGCAT 203578 >seq27 Length=240170 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || || ||||| |||||||||||||| || ||| |||| Sbjct 62180 AGCACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCC 62239 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| ||||| || || ||||| |||||| ||| | | ||||||||| Sbjct 62240 TCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCC 62299 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | ||| |||| || || || | ||||| || Sbjct 62300 TGGATCTTGGACTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTC 62359 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || || || ||||||||||| Sbjct 62360 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 62391 >seq737 Length=337091 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||||||||| || ||| |||| Sbjct 284543 AGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCC 284602 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| ||||| || || ||||| |||||| ||| | || ||||||||| Sbjct 284603 TCGAGTTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTC- 284661 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||| | || | | || | |||| || || || || | ||||| | Sbjct 284662 -CTGAATTTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAG 284720 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAG 34381 | || || || || || ||||| ||| Sbjct 284721 TCTTACCCGTAAGGGTCTTCACGAAG 284746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069066607200