Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq27 140 3e-28 seq698 129 5e-25 seq737 120 2e-22 >seq27 Length=240170 Score = 140 bits (154), Expect = 3e-28 Identities = 159/212 (75%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || |||||||||||||| |||||||||||| || ||| |||| || ||||| Sbjct 62188 GTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGTTG 62247 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| |||||||||||||| || | |||||||||||| || || Sbjct 62248 CTTGCCGGCGAAGATCAGTCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTT 62307 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||||||||| | ||| || ||||||||||| Sbjct 62308 GGACTTGACATTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGT 62367 Query 45313 CAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 || ||||| || ||||| |||||| |||||| Sbjct 62368 GAGGGTCTTGACGAAGATCTGCATGATTGCCT 62399 >seq698 Length=460427 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| ||||| ||||||||| |||||||||||| |||| |||| |||| ||| Sbjct 204014 ACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCC 203955 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | || ||||| || ||||| | || ||||||||| | Sbjct 203954 AGCTGCTTTCCAGCGAAGATGAGACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGA 203895 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | || || || | |||||| ||||| Sbjct 203894 ATCTTGCTCTTCACGTTGTCGATGGTGTCGGAAGATTCAACTTCGAGGGTAATTGTCTTC 203835 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||||| |||||||||||||| Sbjct 203834 CCCGTCAATGTCTTGACAAAGATTTGCAT 203806 Score = 127 bits (140), Expect = 2e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || |||||||||||||| |||||||||||| || |||| |||| || ||||| Sbjct 203264 GTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCGTCTTCAAGTTG 203205 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| ||||| ||||||||||| || || | |||||||||||| || || Sbjct 203204 CTTTCCGGCGAAAATCAATCGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 203145 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 |||||| | | | | ||| || ||||| | || || |||||||| || Sbjct 203144 CGACTTAACGTTGTCGATGGTATCCGAGGATTCGACCTCAAGAGTGATGGTCTTGCCGGT 203085 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||| || ||||| ||||| ||| Sbjct 203084 GAGGGTCTTGACGAAGATCTGCATCTTG 203057 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| |||||||||||| || || | || || || || Sbjct 203553 GTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCCTCAAGCTG 203494 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| ||||| ||||| ||||| ||||| | |||||||||||| ||| || Sbjct 203493 CTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTT 203434 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| ||| ||||||| ||| || ||||| || || Sbjct 203433 CGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTTCCGGT 203374 Query 45313 CAGAGTCTTCACAA 45326 || ||||| |||| Sbjct 203373 AAGGGTCTTTACAA 203360 >seq737 Length=337091 Score = 120 bits (132), Expect = 2e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || || |||| || ||||| Sbjct 284551 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCGAGTTG 284610 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| |||||||||||||| || | |||||||||||| |||||| Sbjct 284611 CTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATTTT 284670 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||||||||| | ||| || ||||| ||||| Sbjct 284671 GGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGT 284730 Query 45313 CAGAGTCTTCACAAAG 45328 || |||||||| ||| Sbjct 284731 AAGGGTCTTCACGAAG 284746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395071612840645