Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq434 176 6e-39 seq334 107 2e-18 >seq434 Length=564148 Score = 176 bits (194), Expect = 6e-39 Identities = 734/1150 (64%), Gaps = 14/1150 (1%) Strand=Plus/Minus Query 62939 CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62998 ||| |||| || |||| || || || || ||||| | || | | || | || || Sbjct 552585 CAACGCAAGGGAAGCCAAGTTGCAAACAGCCACCTCGTCAGGGGCAGAGTACTCGATGAT 552526 Query 62999 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63058 ||||||||| || || | ||||| || | || | || || ||||| ||| Sbjct 552525 CTCAGTGCAGAGGTTCGAGCTGCGAATAGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTT 552466 Query 63059 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63118 || |||||| ||||| ||||| || | ||||| ||| |||||| ||| | ||| || Sbjct 552465 GCAGTGATCCTTGTAAAGCATGAAGGGGTTTCCAGTCTCAGTCTGAGCTTCGAGAATGGC 552406 Query 63119 TTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAG 63177 | ||| | | || ||||||| || | | | | ||| |||||| Sbjct 552405 ATACCACA-GCTTCTGAGCCTTAATCTTCTGGCGGCCACGACCCTCTGCTTCGTACTTCT 552347 Query 63178 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGAC 63237 |||| || |||||||| || | |||| | | | | ||| ||||| | || | Sbjct 552346 CGTACAGGGCCTCAAACTCGTCGCCATAGACATCGGCTAGGCCAGGGCATTCGTTGGGGC 552287 Query 63238 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63297 |||| | | |||||| || | | || || || ||||| ||||| || |||||||||| Sbjct 552286 ACATGAGGGTCCACTCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATCCAAA 552227 Query 63298 GAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63357 |||| | || ||||| | | | ||| || || || |||||| ||| || | Sbjct 552226 GAGCCAGGAAAAGATCACGGGCACGGACTTCTTCCTTGCCGTGGTTCTTTCGAAGGTCCA 552167 Query 63358 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63417 ||||| | | || ||| || ||||| || || | || ||||| | | | ||||| | | Sbjct 552166 GGAACTCGAAAACATCCGAGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCAGGTCTCT 552107 Query 63418 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63477 |||| || ||||| |||| ||||||||| |||||||| | || | | ||| || | || Sbjct 552106 TGTTGCCACCCTGGTCTACGTATCTAGCAGTGTTATTGAAGACACGGAGCATGGGTACAA 552047 Query 63478 TACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA 63537 ||||||| || | || || || |||| || || || | || ||||| | Sbjct 552046 TACCGTTCGAGGTGCCGTTAGTGCCGGCAATGTATGAGCCGGTAGCGCGAATGCGGTGGA 551987 Query 63538 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTGTCA 63596 | ||||| || || || ||||| || ||||| | ||||| || |||| ||||| Sbjct 551986 TGTTGAGACCAATACCACCGGCCATCTTGGAGATCATGGCGCA-GGTCTTAAGGGTGTCG 551928 Query 63597 TAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63656 ||||| || || ||||| || || |||||| || || || ||| || | || Sbjct 551927 TAGATACCCTCAATGCTGTCGTCCTTCATGTCAACGAGGAAGCAGGATGAGAGCTGAGCC 551868 Query 63657 CGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 63716 | | ||||| ||||| || | || || || || || || || |||| || | Sbjct 551867 TGGGGTGTTCCAGCATTGAAGAGAGTTGGGGAGGCATGGGTGAAGTATTTGCTGGACATG 551808 Query 63717 AGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGAC 63772 || || || |||| ||| | || | ||| || |||| || || || || Sbjct 551807 AGGTTATAGGTCTGTATAACCTTCTCCACATCATCACCCCAGATG----CCGACAGCCAC 551752 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 |||||| | ||||||||| ||||| || || || || | || | || | || || || Sbjct 551751 ACGCATGATCATGTGCTGCGGTCTCTCGACGATCTTATCGTCAAGCTTGAGCAGATATGA 551692 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892 | |||||||| || || || || || | ||| ||||||| || || | ||| | Sbjct 551691 TCGCTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCTGTCATAGACAATGGC 551632 Query 63893 CGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCG 63951 || | | | ||||| | | | | || | | | | | | ||| || || || | Sbjct 551631 AGAGTCAAAGTCCTCCTTGTGTCTCATGAC-ACACTCGTAGGTCTCCTTAGAGATCATAG 551573 Query 63952 GAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAA 64011 |||| | || | || || || || ||||||| | | | ||| || || || Sbjct 551572 GAGATGGCTTTCTGTTCTTTGGGTTGACATAGTGGTAGAGATCACTGATGACAGCAGACC 551513 Query 64012 ATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCAT 64071 | | || || || | ||||||||| ||||| | ||| || | || || || ||||||| Sbjct 551512 ACTGCTTCTTGGTCTGCTTGTGTAGGTTTGACACGGCAATACGTGCAGCGAGGATGGCAT 551453 Query 64072 AATCCGGATG 64081 | || || || Sbjct 551452 AGTCTGGGTG 551443 >seq334 Length=652976 Score = 107 bits (118), Expect = 2e-18 Identities = 245/368 (67%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||| ||||||||||| | || | |||||||| || || || Sbjct 128924 CAGGCGAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTAGAGAAGGTCAGG 128865 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || |||||||| || ||||| || ||||| ||||| | ||| |||||| Sbjct 128864 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAG 128805 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGT 33758 || || || || || |||||||| || | | || | | || ||||| Sbjct 128804 ATGCCCTCGACGGCGGCAAAGGCGATCAAACGCTGGGCGAAGGTGGACTTCTTGTCAGCG 128745 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | | ||||| || |||||| | | ||||| || || || ||||| || Sbjct 128744 ATCCAGTGCAGGGCCCAGTCCGCCTTCCTGCGGATGCAAGGGATGGTGTCGATGGCGTTG 128685 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 ||||||| | | || | || || | || || || || | ||| || | Sbjct 128684 AAGAGATGGGTCTTCTGGGCGGGCTCCTTGATGTATGTGTCAATGAGGAGAGAGTAGGTC 128625 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || || ||||| || || ||||| || |||||||| |||| ||||||| |||| Sbjct 128624 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGCGCCTCGGGAATC 128565 Query 33939 TGCACTTC 33946 || || || Sbjct 128564 TGGACCTC 128557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811734823600