Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq434 187 3e-42 >seq434 Length=564148 Score = 187 bits (206), Expect = 3e-42 Identities = 588/903 (65%), Gaps = 20/903 (2%) Strand=Plus/Minus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || |||||||| || | |||| | | | ||||| ||||| | || ||||| | | | Sbjct 552335 TCAAACTCGTCGCCATAGACATCGGCTAGGCCAGGGCATTCGTTGGGGCACATGAGGGTC 552276 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 ||||| || | | || || || ||||| ||||| || |||||||||||||| | || Sbjct 552275 CACTCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATCCAAAGAGCCAGGAAA 552216 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161 | ||| | || | ||| || || || |||||| ||| || |||||| | | | Sbjct 552215 AGATCACGGGCACGGACTTCTTCCTTGCCGTGGTTCTTTCGAAGGTCCAGGAACTCGAAA 552156 Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221 | ||| | ||||| || || | || ||||| | | | ||||| | ||||| || ||| Sbjct 552155 ACATCCGAGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCAGGTCTCTTGTTGCCACCC 552096 Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281 || |||| ||||||||| |||||||| | || | | ||| || | |||||| || || Sbjct 552095 TGGTCTACGTATCTAGCAGTGTTATTGAAGACACGGAGCATGGGTACAATACCGTTCGAG 552036 Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCT 66341 || || || || |||| || || || | || ||||| || ||||| Sbjct 552035 GTGCCGTTAGTGCCGGCAATGTATGAGCCGGTAGCGCGAATGCGGTGGATGTTGAGACCA 551976 Query 66342 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTC 66400 || || || ||||| || ||||| | ||||| || |||| || || ||||| ||||| Sbjct 551975 ATACCACCGGCCATCTTGGAGATCATGGCGCA-GGTCTTAAGGGTGTCGTAGATACCCTC 551917 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT----AG 66456 || || || ||| |||||| || || || ||| || | | ||| | || | Sbjct 551916 AATGCTGTCGTCCTTCATGTCAACGAGGAAGCAGGATGAGA---GCTGA-GCCTGGGGTG 551861 Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516 |||| ||||| || | || || || || || || || |||| || | || || | Sbjct 551860 TTCCAGCATTGAAGAGAGTTGGGGAGGCATGGGTGAAGTATTTGCTGGACATGAGGTTAT 551801 Query 66517 ACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATT 66572 | |||| ||| | || | ||| || |||| || || || |||||||| Sbjct 551800 AGGTCTGTATAACCTTCTCCACATCATCACCCCAGATG----CCGACAGCCACACGCATG 551745 Query 66573 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 66632 | ||||||||| ||||| || |||||||| | || | || | || || ||| ||| Sbjct 551744 ATCATGTGCTGCGGTCTCTCGACGATCTTATCGTCAAGCTTGAGCAGATATGATCGCTCC 551685 Query 66633 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 66692 ||||| || || || || || | ||| ||||||| || || | ||| | |||| Sbjct 551684 AAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCTGTCATAGACAATGGCAGAGTCA 551625 Query 66693 AGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAATG 66751 | | ||||| | | | | || ||| | | | | ||| || || || ||||| | Sbjct 551624 AAGTCCTCCTTGTGTCTCATGAC-ACACTCGTAGGTCTCCTTAGAGATCATAGGAGATGG 551566 Query 66752 TTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 66811 || | || || || |||||||||| | | | ||| || || || | | || Sbjct 551565 CTTTCTGTTCTTTGGGTTGACATAGTGGTAGAGATCACTGATGACAGCAGACCACTGCTT 551506 Query 66812 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGG 66871 || || | |||||||| ||||| ||||| || | || || | |||||||| || || Sbjct 551505 CTTGGTCTGCTTGTGTAGGTTTGACACGGCAATACGTGCAGCGAGGATGGCATAGTCTGG 551446 Query 66872 ATG 66874 || Sbjct 551445 GTG 551443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658166670765800