Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq434 187 3e-42 >seq434 Length=564148 Score = 187 bits (206), Expect = 3e-42 Identities = 588/903 (65%), Gaps = 20/903 (2%) Strand=Plus/Minus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 || |||||||| || | ||| | ||| ||||| ||||| || || ||||| | | | Sbjct 552335 TCAAACTCGTCGCCATAGACATCGGCTAGGCCAGGGCATTCGTTGGGGCACATGAGGGTC 552276 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 ||||| |||| | | || || ||||| ||||| || |||||||||||||| | || Sbjct 552275 CACTCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGAATCCAAAGAGCCAGGAAA 552216 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 ||||| | || | || || || || |||||| ||| || |||||| | | | Sbjct 552215 AGATCACGGGCACGGACTTCTTCCTTGCCGTGGTTCTTTCGAAGGTCCAGGAACTCGAAA 552156 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 | ||| || ||||| || || | || ||||| | | | || || | ||||| || ||| Sbjct 552155 ACATCCGAGTGCCAAGGCTCGAGATAGATGGCAAAAGCACCAGGTCTCTTGTTGCCACCC 552096 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 || |||| ||||||||| |||||||| | || | | ||| || | |||||| || || Sbjct 552095 TGGTCTACGTATCTAGCAGTGTTATTGAAGACACGGAGCATGGGTACAATACCGTTCGAG 552036 Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCT 72303 | || || || |||| || || || | || ||||| | || ||||| Sbjct 552035 GTGCCGTTAGTGCCGGCAATGTATGAGCCGGTAGCGCGAATGCGGTGGATGTTGAGACCA 551976 Query 72304 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTC 72362 || || || ||||| || ||||| | ||||| || |||| || || ||||| ||||| Sbjct 551975 ATACCACCGGCCATCTTGGAGATCATGGCGCA-GGTCTTAAGGGTGTCGTAGATACCCTC 551917 Query 72363 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT----AG 72418 || || || ||| |||||| || || || ||| || | | ||| | || | Sbjct 551916 AATGCTGTCGTCCTTCATGTCAACGAGGAAGCAGGATGAGA---GCTGA-GCCTGGGGTG 551861 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 |||| ||||| || | || || || || || || || |||| |||| || || | Sbjct 551860 TTCCAGCATTGAAGAGAGTTGGGGAGGCATGGGTGAAGTATTTGCTGGACATGAGGTTAT 551801 Query 72479 ACGTCTCAATAGCTGATTCTATATC----CCATTGATGTATTCCTACCGCGACACGCATT 72534 | |||| ||| | || | ||| || |||| || || || |||||||| Sbjct 551800 AGGTCTGTATAACCTTCTCCACATCATCACCCCAGATG----CCGACAGCCACACGCATG 551745 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 | ||| ||||| ||||| || |||||||| | | | || | || || ||| ||| Sbjct 551744 ATCATGTGCTGCGGTCTCTCGACGATCTTATCGTCAAGCTTGAGCAGATATGATCGCTCC 551685 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 72654 ||||| || || || || || | ||| ||||||| || || | ||| | || | Sbjct 551684 AAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCTGTCATAGACAATGGCAGAGTCA 551625 Query 72655 AGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATG 72713 | | ||||| | | | | || | | | | | | ||| || || || ||||| | Sbjct 551624 AAGTCCTCCTTGTGTCTCATGAC-ACACTCGTAGGTCTCCTTAGAGATCATAGGAGATGG 551566 Query 72714 TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 72773 || | || || || || ||||||| | | | ||| || || || | | || Sbjct 551565 CTTTCTGTTCTTTGGGTTGACATAGTGGTAGAGATCACTGATGACAGCAGACCACTGCTT 551506 Query 72774 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGG 72833 || || | ||||||||| ||||| ||||| || | || || || |||||||| ||||| Sbjct 551505 CTTGGTCTGCTTGTGTAGGTTTGACACGGCAATACGTGCAGCGAGGATGGCATAGTCTGG 551446 Query 72834 ATG 72836 || Sbjct 551445 GTG 551443 Score = 87.8 bits (96), Expect = 2e-12 Identities = 196/292 (67%), Gaps = 5/292 (2%) Strand=Plus/Minus Query 70788 TTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACAT 70847 ||| | ||| | || ||||| || |||| || ||||||| ||||| || |||||||| Sbjct 553500 TTCTTGGTCGACGGTGAACTGGATAGGAGCGGCAGCGGCTTGTGTACGAAGGTAGTACAT 553441 Query 70848 GCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGC 70906 ||| || || || ||||| |||| || |||||||||||| || | ||| |||| Sbjct 553440 GCCAGTCTTCAGTCCGAGCTTCCAACCAGTAAAATGCATACTGGTAATCTTGCCCATAG- 553382 Query 70907 TAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTG 70966 | || || ||||| || |||| ||| || || || ||||| || || | ||| | Sbjct 553381 TGGGTTCTCTCATGTGGATGTTCAGCGATTGGGACTGGTCAATGAATGCACCACGGTCAG 553322 Query 70967 CAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAA 71026 | ||||| | | | || || | |||||||||| || || || | ||| | Sbjct 553321 CGGCCATCTGGACAACAGTTCGCTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCCTTTA 553262 Query 71027 TATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075 |||| | || ||| | | |||||||| || || || || ||||| || Sbjct 553261 TATCGGCAGGGRTGTTAGGAATGTTCTGAATCGAACCGCCCTCAGCAATGAT 553210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671132950016200