Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq698 129 1e-24 seq737 114 3e-20 >seq698 Length=460427 Score = 129 bits (142), Expect = 1e-24 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| ||||| | |||||| || || || |||||| Sbjct 204002 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCGTCCTCCAGCTGCTTTCCA 203943 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 || || || || | |||||||||||||| || ||||| || ||||||||| ||||| || Sbjct 203942 GCGAAGATGAGACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGAATC-TTGCTCTT 203884 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| || ||| || || || ||||| ||||| || || | ||| Sbjct 203883 CACGTTGTCGATGGTGTCGGAAGATTCAACTTCGAGGGTAATTGTCTTCCCCGTCAATGT 203824 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 203823 CTTGACAAAGATTTGCAT 203806 Score = 104 bits (114), Expect = 5e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| ||||| |||| || || || || || || || Sbjct 203546 GTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCCTCAAGCTGCTTGCCG 203487 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || |||||||| || || || || ||||||||||| | || Sbjct 203486 GCGAAGATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 203427 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| | || || ||||| || ||||| || Sbjct 203426 ACATTGTCGATGGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTTCCGGTAAGGGTC 203367 Query 104543 TTTACAA 104549 ||||||| Sbjct 203366 TTTACAA 203360 >seq737 Length=337091 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||||| ||||| || ||||| || || Sbjct 284558 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCGAGTTGCTTGCCG 284617 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | |||||| || || || || || || || |||||||| || | || Sbjct 284618 GCGAAGATCAGACGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATTTTGGACTTG 284677 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || || ||||| || || ||||||||||| ||||| || Sbjct 284678 ACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGTAAGGGTC 284737 Query 104543 TTTACAAA--TATCTGCATTTT 104562 || || || ||| || ||||| Sbjct 284738 TTCACGAAGCTAT-TGAATTTT 284758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151387409542460