Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypoxylon_20sp._20E7406B_20[genbank_20GCA_5F000931505.1_202015-02- 23] 745 sequences; 39,901,278 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq698 100 2e-16 seq737 84.2 2e-11 seq27 84.2 2e-11 >seq698 Length=460427 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 24001 TTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCG 24060 ||||||| || | || ||||| | || ||| | || |||||| | ||||||||||| Sbjct 203360 TTGTAAAGACCCTTACCGGAAAGACCATCACCTTGGAGGTCGAGTCGTCCGACACCATCG 203419 Query 24061 AGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGA 24120 | | ||||| |||||| ||||| || ||||| ||||| || || ||| || ||| Sbjct 203420 ACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGATTGA 203479 Query 24121 TTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAG 24180 | | || ||||||||| || || |||| | ||| | | ||| || ||||| || || | Sbjct 203480 TCTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTATCCGACTACAACATCCAGAAGG 203539 Query 24181 AATCTACAATTCA 24193 |||| || |||| Sbjct 203540 AATCCACTCTTCA 203552 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||||| || || || | |||||| ||||||| || | | Sbjct 203806 ATGCAAATCTTTGTCAAGACATTGACGGGGAAGACAATTACCCTCGAAGTTGAATCTTCC 203865 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| |||||||| ||||| |||||| Sbjct 203866 GACACCATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAA 203925 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || || ||||| || || || | | | | ||||| || ||| Sbjct 203926 CAACGTCTCATCTTCGCTGGAAAGCAGCTGGAGGACGGTCGCACTCTGAGCGACTACAAC 203985 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || ||||| Sbjct 203986 ATCCAGAAGGAGTCTAC 204002 >seq737 Length=337091 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTT-GTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||| ||| | || || || || | || || || | || ||| |||| || ||| | Sbjct 284758 AAAATTCAATAGCTTCGTGAAGACCCTTACGGGTAAGACTATCACCCTCGAGGTGGAGTC 284699 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 |||||||||||| | ||||| || ||| ||||| || ||||| || ||||| Sbjct 284698 TTCCGACACCATCGACAATGTCAAGTCCAAAATTCAGGACAAGGAGGGCATCCCCCCCGA 284639 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | ||||| | || ||||||||||||||| || | | ||| | ||| || Sbjct 284638 CCAACAGCGTCTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGAACTCTTTCCGACTA 284579 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 284578 CAACATCCAGAAGGAGTCCAC 284558 >seq27 Length=240170 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| | || || ||| | | | Sbjct 62391 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 62332 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || ||||| ||| Sbjct 62331 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAA 62272 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| ||||||| | || ||||||||||||||| || | | | | || ||| || ||| Sbjct 62271 CAGCGACTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTCTCCGACTACAAC 62212 Query 24171 ATTCAAAAAGA 24181 || || || || Sbjct 62211 ATCCAGAAGGA 62201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429932096315475